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CutC in complex with inhibitor1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other inhouse model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 25% PEG 3350, 0.2 M ammonium sulfate, and 0.1 M Bis-Tris pH 5.5
Crystal Properties Matthews coefficient Solvent content 2.46 49.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.664 α = 102.43 b = 104.764 β = 108.54 c = 119.493 γ = 104.91
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2021-11-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX IV BEAMLINE BioMAX 0.976 MAX IV BioMAX
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.599 107.17 74.5 0.078 0.092 0.048 9.4 3.6 338035
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.599 1.734 17.4 0.748 0.884 0.466 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.84 107.17 276984 14479 97.05 0.18389 0.18221 0.1901 0.21606 0.222 RANDOM 23.352
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.478 r_dihedral_angle_4_deg 19.91 r_dihedral_angle_3_deg 14.808 r_dihedral_angle_1_deg 7.044 r_long_range_B_refined 4.576 r_long_range_B_other 4.571 r_scangle_other 3.92 r_scbond_other 2.596 r_scbond_it 2.595 r_mcangle_it 2.327
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.478 r_dihedral_angle_4_deg 19.91 r_dihedral_angle_3_deg 14.808 r_dihedral_angle_1_deg 7.044 r_long_range_B_refined 4.576 r_long_range_B_other 4.571 r_scangle_other 3.92 r_scbond_other 2.596 r_scbond_it 2.595 r_mcangle_it 2.327 r_mcangle_other 2.327 r_mcbond_it 1.749 r_mcbond_other 1.749 r_angle_refined_deg 1.639 r_angle_other_deg 1.436 r_chiral_restr 0.091 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 25052 Nucleic Acid Atoms Solvent Atoms 1077 Heterogen Atoms 36
Software Software Software Name Purpose REFMAC refinement MOLREP phasing