☰ Navigation Tabs
SSNMR structure of amyloid fibrils formed by human RIPK1
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 NCACX 25 % w/w [U-100% 13C; U-100% 15N] protein, 75 % w/w None protein 100% H2O 0 mM 7.4 1 atm 310 Bruker AVANCE NEO 600 2 NCOCX 25 % w/w [U-100% 13C; U-100% 15N] protein, 75 % w/w None protein 100% H2O 0 mM 7.4 1 atm 310 Bruker AVANCE NEO 600 3 CANCOCX 25 % w/w [U-100% 13C; U-100% 15N] protein, 75 % w/w None protein 100% H2O 0 mM 7.4 1 atm 310 Bruker AVANCE NEO 600 4 CORD 20 ms 25 % w/w [U-100% 13C; U-100% 15N] protein, 75 % w/w None protein 100% H2O 0 mM 7.4 1 atm 310 Bruker AVANCE NEO 600 5 CORD 50 ms 25 % w/w [U-100% 13C; U-100% 15N] protein, 75 % w/w None protein 100% H2O 0 mM 7.4 1 atm 310 Bruker AVANCE NEO 600 6 CORD 100 ms 25 % w/w [U-100% 13C; U-100% 15N] protein, 75 % w/w None protein 100% H2O 0 mM 7.4 1 atm 310 Bruker AVANCE NEO 600 7 CORD 500 ms 25 % w/w [U-100% 13C; U-100% 15N] protein, 75 % w/w None protein 100% H2O 0 mM 7.4 1 atm 310 Bruker AVANCE NEO 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE NEO 600
NMR Refinement Method Details Software molecular dynamics 100 structures calculated with cyana and 10 lowest-energy conformers refined using GROMACS GROMACS
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 2 refinement GROMACS https://doi.org/10.5281/zenodo.11148638 3 chemical shift assignment CcpNmr Analysis CCPN