9HR9 | pdb_00009hr9

SSNMR structure of amyloid fibrils formed by human RIPK1


SOLID-STATE NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1NCACX25 % w/w [U-100% 13C; U-100% 15N] protein, 75 % w/w None protein100% H2O0 mM7.41 atm310Bruker AVANCE NEO 600
2NCOCX25 % w/w [U-100% 13C; U-100% 15N] protein, 75 % w/w None protein100% H2O0 mM7.41 atm310Bruker AVANCE NEO 600
3CANCOCX25 % w/w [U-100% 13C; U-100% 15N] protein, 75 % w/w None protein100% H2O0 mM7.41 atm310Bruker AVANCE NEO 600
4CORD 20 ms25 % w/w [U-100% 13C; U-100% 15N] protein, 75 % w/w None protein100% H2O0 mM7.41 atm310Bruker AVANCE NEO 600
5CORD 50 ms25 % w/w [U-100% 13C; U-100% 15N] protein, 75 % w/w None protein100% H2O0 mM7.41 atm310Bruker AVANCE NEO 600
6CORD 100 ms25 % w/w [U-100% 13C; U-100% 15N] protein, 75 % w/w None protein100% H2O0 mM7.41 atm310Bruker AVANCE NEO 600
7CORD 500 ms25 % w/w [U-100% 13C; U-100% 15N] protein, 75 % w/w None protein100% H2O0 mM7.41 atm310Bruker AVANCE NEO 600
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerAVANCE NEO600
NMR Refinement
MethodDetailsSoftware
molecular dynamics100 structures calculated with cyana and 10 lowest-energy conformers refined using GROMACSGROMACS
NMR Ensemble Information
Conformer Selection Criteriatarget function
Conformers Calculated Total Number100
Conformers Submitted Total Number10
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure calculationCYANAGuntert, Mumenthaler and Wuthrich
2refinementGROMACShttps://doi.org/10.5281/zenodo.11148638
3chemical shift assignmentCcpNmr AnalysisCCPN