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NMR solution structure of RPRD2 CTD-interacting domain and pS2,7 RNAPII CTD peptide.
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 3 2D 1H-13C HSQC aliphatic 0.4 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1 mM pS2pS7 CTD 90% H2O/10% D2O 100 mM 8.0 1 Pa 293.15 Bruker AVANCE III HD 950 4 2D 1H-13C HSQC aromatic 0.4 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1 mM pS2pS7 CTD 90% H2O/10% D2O 100 mM 8.0 1 Pa 293.15 Bruker AVANCE III HD 950 11 2D 1H-15N HSQC 0.4 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1 mM pS2pS7 CTD 90% H2O/10% D2O 100 mM 8.0 1 Pa 293.15 Bruker AVANCE III HD 850 5 3D 1H-13C NOESY aliphatic 0.4 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1 mM pS2pS7 CTD 90% H2O/10% D2O 100 mM 8.0 1 Pa 293.15 Bruker AVANCE III HD 950 6 3D 1H-13C NOESY aromatic 0.4 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1 mM pS2pS7 CTD 90% H2O/10% D2O 100 mM 8.0 1 Pa 293.15 Bruker AVANCE III HD 950 8 3D 1H-15N NOESY 0.4 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1 mM pS2pS7 CTD 90% H2O/10% D2O 100 mM 8.0 1 Pa 293.15 Bruker AVANCE III HD 950 1 3D (H)CC(CO)NH 0.4 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1 mM pS2pS7 CTD 90% H2O/10% D2O 100 mM 8.0 1 Pa 293.15 Bruker AVANCE III HD 700 12 3D HNCA 0.4 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1 mM pS2pS7 CTD 90% H2O/10% D2O 100 mM 8.0 1 Pa 293.15 Bruker AVANCE III HD 850 7 3D HNCACB 0.4 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1 mM pS2pS7 CTD 90% H2O/10% D2O 100 mM 8.0 1 Pa 293.15 Bruker AVANCE III HD 850 9 3D CBCA(CO)NH 0.4 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1 mM pS2pS7 CTD 90% H2O/10% D2O 100 mM 8.0 1 Pa 293.15 Bruker AVANCE III HD 850 10 3D H(CCO)NH 0.4 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1 mM pS2pS7 CTD 90% H2O/10% D2O 100 mM 8.0 1 Pa 293.15 Bruker AVANCE III HD 950
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III HD 850 2 Bruker AVANCE III HD 700 3 Bruker AVANCE III HD 950
NMR Refinement Method Details Software simulated annealing Amber
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 50 Conformers Submitted Total Number 20 Representative Model 1 (first structure in the bundle)
Computation: NMR Software # Classification Version Software Name Author 5 collection TopSpin Bruker Biospin 1 chemical shift assignment Sparky Goddard 2 structure calculation CYANA Guntert, Mumenthaler and Wuthrich 3 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 4 peak picking Sparky Goddard