9HM8 | pdb_00009hm8

NMR solution structure of RPRD2 CTD-interacting domain and pS2,7 RNAPII CTD peptide.

SOLUTION NMR

NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
3	2D 1H-13C HSQC aliphatic	0.4 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1 mM pS2pS7 CTD	90% H2O/10% D2O	100 mM	8.0	1 Pa	293.15	Bruker AVANCE III HD 950
4	2D 1H-13C HSQC aromatic	0.4 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1 mM pS2pS7 CTD	90% H2O/10% D2O	100 mM	8.0	1 Pa	293.15	Bruker AVANCE III HD 950
11	2D 1H-15N HSQC	0.4 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1 mM pS2pS7 CTD	90% H2O/10% D2O	100 mM	8.0	1 Pa	293.15	Bruker AVANCE III HD 850
5	3D 1H-13C NOESY aliphatic	0.4 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1 mM pS2pS7 CTD	90% H2O/10% D2O	100 mM	8.0	1 Pa	293.15	Bruker AVANCE III HD 950
6	3D 1H-13C NOESY aromatic	0.4 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1 mM pS2pS7 CTD	90% H2O/10% D2O	100 mM	8.0	1 Pa	293.15	Bruker AVANCE III HD 950
8	3D 1H-15N NOESY	0.4 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1 mM pS2pS7 CTD	90% H2O/10% D2O	100 mM	8.0	1 Pa	293.15	Bruker AVANCE III HD 950
1	3D (H)CC(CO)NH	0.4 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1 mM pS2pS7 CTD	90% H2O/10% D2O	100 mM	8.0	1 Pa	293.15	Bruker AVANCE III HD 700
12	3D HNCA	0.4 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1 mM pS2pS7 CTD	90% H2O/10% D2O	100 mM	8.0	1 Pa	293.15	Bruker AVANCE III HD 850
7	3D HNCACB	0.4 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1 mM pS2pS7 CTD	90% H2O/10% D2O	100 mM	8.0	1 Pa	293.15	Bruker AVANCE III HD 850
9	3D CBCA(CO)NH	0.4 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1 mM pS2pS7 CTD	90% H2O/10% D2O	100 mM	8.0	1 Pa	293.15	Bruker AVANCE III HD 850
10	3D H(CCO)NH	0.4 mM [U-100% 13C; U-100% 15N] RPRD2 CID, 1 mM pS2pS7 CTD	90% H2O/10% D2O	100 mM	8.0	1 Pa	293.15	Bruker AVANCE III HD 950

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III HD	850
2	Bruker	AVANCE III HD	700
3	Bruker	AVANCE III HD	950

NMR Refinement
Method	Details	Software
simulated annealing		Amber

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	50
Conformers Submitted Total Number	20
Representative Model	1 (first structure in the bundle)

Computation: NMR Software
#	Classification	Version	Software Name	Author
5	collection	TopSpin		Bruker Biospin
1	chemical shift assignment	Sparky		Goddard
2	structure calculation	CYANA		Guntert, Mumenthaler and Wuthrich
3	refinement	Amber		Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman
4	peak picking	Sparky		Goddard

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.