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Structure of the malarial hexose transporter 1 (PfHT1) in complex with 2,5-anhydro-D-mannitol.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6RW3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 0.1 M HEPES pH 7.5, 26 % (w/v) PEG 400.
Crystal Properties Matthews coefficient Solvent content 3.4 63.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 123.924 α = 90 b = 70.752 β = 107.06 c = 181.361 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M KB Mirror 2021-07-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.8731 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.55 25.36 98.69 0.98 5.02 6.5 235910 123.14
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.55 3.67 98.2 0.276 0.73
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 3.55 25.36 1.33 68699 3437 96.84 0.2349 0.2327 0.2342 0.2756 0.2734 138.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 10.4499 f_angle_d 0.6921 f_chiral_restr 0.0385 f_plane_restr 0.0041 f_bond_d 0.0032
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14963 Nucleic Acid Atoms Solvent Atoms 20 Heterogen Atoms 338
Software Software Software Name Purpose XDS data reduction PHENIX refinement XDS data reduction XDS data scaling PHENIX phasing