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Bacteroides thetaiotaomicron BAM complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9HIS experimental model PDB 9HIV
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 8.071 f_angle_d 0.924 f_chiral_restr 0.057 f_plane_restr 0.01 f_bond_d 0.006
Sample Bacteroides thetaiotaomicron BAM complex
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 105155 Reported Resolution (Å) 3.46 Resolution Method OTHER Other Details The best parts of two maps at 3.28 A and 3.46 A were combined using phenix.combine_focused_maps Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 (9HIS, 9HIV) Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Overall B Value 64.9 Fitting Procedure Details Experimental models were fit into the combined focused map.
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 35
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 800 Maximum Defocus (nm) 2000 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 165000 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION 2266553