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Structure of DC11 anti tau antibody Fab fragment
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7T62
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293 0.1% MIB,
25% w/v PEG 1500
Crystal Properties Matthews coefficient Solvent content 2.19 43.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 40.901 α = 90 b = 88.445 β = 94.803 c = 57.464 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-02-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) 0.9763 PETRA III, EMBL c/o DESY P13 (MX1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.331 48.067 90.2 0.996 9.029 6 70143
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.331 1.432 0.5694
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.331 48.067 70143 3512 75.403 0.148 0.1452 0.145 0.1964 0.196 21.224
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.164 -0.004 0.244 -0.079
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 20.512 r_lrange_other 18.117 r_dihedral_angle_6_deg 13.838 r_dihedral_angle_2_deg 12.423 r_dihedral_angle_3_deg 11.415 r_scangle_it 10.287 r_scangle_other 10.285 r_mcangle_it 8.279 r_mcangle_other 8.278 r_dihedral_angle_1_deg 7.073
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 20.512 r_lrange_other 18.117 r_dihedral_angle_6_deg 13.838 r_dihedral_angle_2_deg 12.423 r_dihedral_angle_3_deg 11.415 r_scangle_it 10.287 r_scangle_other 10.285 r_mcangle_it 8.279 r_mcangle_other 8.278 r_dihedral_angle_1_deg 7.073 r_scbond_it 7.07 r_scbond_other 7.069 r_mcbond_it 5.68 r_mcbond_other 5.678 r_rigid_bond_restr 3.557 r_angle_refined_deg 1.706 r_angle_other_deg 0.621 r_symmetry_nbd_other 0.223 r_nbd_refined 0.221 r_symmetry_nbd_refined 0.194 r_nbd_other 0.189 r_xyhbond_nbd_refined 0.185 r_nbtor_refined 0.176 r_symmetry_xyhbond_nbd_refined 0.113 r_symmetry_nbtor_other 0.092 r_chiral_restr 0.088 r_gen_planes_refined 0.009 r_bond_refined_d 0.008 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3318 Nucleic Acid Atoms Solvent Atoms 523 Heterogen Atoms 7
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling PHASER phasing