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Bacteroides ovatus GH98 endoxylanase with Seleno-methionine substituents
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 294 PEG based
Crystal Properties Matthews coefficient Solvent content 2.21 44.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 183.914 α = 90 b = 62.447 β = 118.058 c = 178.713 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2022-01-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.97950 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 58.47 99.8 0.987 5.5 19.4 121030
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 0.397 1.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 2 58.4 121005 6152 99.627 0.195 0.1922 0.1987 0.2418 0.2487 29.655
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.71 0.808 -0.834 -0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.428 r_dihedral_angle_3_deg 12.923 r_dihedral_angle_2_deg 9.768 r_dihedral_angle_1_deg 7.736 r_lrange_it 5.762 r_lrange_other 5.705 r_scangle_it 3.41 r_scangle_other 3.41 r_mcangle_it 2.857 r_mcangle_other 2.857
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.428 r_dihedral_angle_3_deg 12.923 r_dihedral_angle_2_deg 9.768 r_dihedral_angle_1_deg 7.736 r_lrange_it 5.762 r_lrange_other 5.705 r_scangle_it 3.41 r_scangle_other 3.41 r_mcangle_it 2.857 r_mcangle_other 2.857 r_scbond_it 2.113 r_scbond_other 2.113 r_mcbond_it 1.764 r_mcbond_other 1.764 r_angle_refined_deg 1.594 r_angle_other_deg 0.554 r_symmetry_xyhbond_nbd_refined 0.279 r_symmetry_nbd_refined 0.265 r_nbd_refined 0.207 r_nbd_other 0.195 r_symmetry_nbd_other 0.19 r_nbtor_refined 0.185 r_xyhbond_nbd_refined 0.183 r_metal_ion_refined 0.149 r_symmetry_nbtor_other 0.085 r_chiral_restr 0.079 r_ncsr_local_group_1 0.075 r_symmetry_xyhbond_nbd_other 0.048 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14240 Nucleic Acid Atoms Solvent Atoms 1261 Heterogen Atoms 51
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling PHASER phasing Coot model building