9H60 | pdb_00009h60

X-RAY DIFFRACTION

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	5.5	298	0.2 M Potassium bromide 0.1 M Sodium acetate pH 5.5 25 % w/v PEG 2000 MME

Crystal Properties
Matthews coefficient	Solvent content
2.34	47.44

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	273	PIXEL	DECTRIS EIGER2 XE 16M		2022-05-25	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04	0.979499	Diamond	I04

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.9	53.88	100	0.154	0.154	0.03	0.999	12.4	27.4		64941

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.9	1.93	100		1.865	0.36	0.844	1	27

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.9	53.873	64861	3275	99.86	0.183	0.181	0.184	0.2175	0.2188	39.215

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.917			2.168		-3.085

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.349
r_dihedral_angle_3_deg	11.67
r_dihedral_angle_2_deg	9.582
r_dihedral_angle_1_deg	7.611
r_lrange_other	7.349
r_lrange_it	7.347
r_scangle_it	5.879
r_scangle_other	5.878
r_mcangle_it	4.335
r_mcangle_other	4.334

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.349
r_dihedral_angle_3_deg	11.67
r_dihedral_angle_2_deg	9.582
r_dihedral_angle_1_deg	7.611
r_lrange_other	7.349
r_lrange_it	7.347
r_scangle_it	5.879
r_scangle_other	5.878
r_mcangle_it	4.335
r_mcangle_other	4.334
r_scbond_it	4.218
r_scbond_other	4.218
r_mcbond_it	3.34
r_mcbond_other	3.23
r_angle_refined_deg	1.482
r_angle_other_deg	0.489
r_nbd_refined	0.202
r_nbd_other	0.198
r_symmetry_nbd_other	0.192
r_nbtor_refined	0.177
r_xyhbond_nbd_refined	0.142
r_symmetry_nbd_refined	0.124
r_symmetry_xyhbond_nbd_refined	0.1
r_ncsr_local_group_1	0.091
r_ncsr_local_group_2	0.088
r_symmetry_nbtor_other	0.086
r_chiral_restr	0.066
r_bond_refined_d	0.008
r_gen_planes_refined	0.007
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5607
Nucleic Acid Atoms
Solvent Atoms	306
Heterogen Atoms	196

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.