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Leishmania braziliensis ISP2 in complex with bovine alpha-chymotrypsin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other Lm ISP2 experimental model Other bovine chymotrypsin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 298 0.2 M Potassium bromide 0.1 M Sodium acetate pH 5.5 25 % w/v PEG 2000 MME
Crystal Properties Matthews coefficient Solvent content 2.34 47.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.276 α = 90 b = 92.086 β = 90 c = 96.519 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 273 PIXEL DECTRIS EIGER2 XE 16M 2022-05-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.979499 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 53.88 100 0.154 0.154 0.03 0.999 12.4 27.4 64941
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 100 1.865 0.36 0.844 1 27
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.9 53.873 64861 3275 99.86 0.183 0.181 0.184 0.2175 0.2188 39.215
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.917 2.168 -3.085
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.349 r_dihedral_angle_3_deg 11.67 r_dihedral_angle_2_deg 9.582 r_dihedral_angle_1_deg 7.611 r_lrange_other 7.349 r_lrange_it 7.347 r_scangle_it 5.879 r_scangle_other 5.878 r_mcangle_it 4.335 r_mcangle_other 4.334
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.349 r_dihedral_angle_3_deg 11.67 r_dihedral_angle_2_deg 9.582 r_dihedral_angle_1_deg 7.611 r_lrange_other 7.349 r_lrange_it 7.347 r_scangle_it 5.879 r_scangle_other 5.878 r_mcangle_it 4.335 r_mcangle_other 4.334 r_scbond_it 4.218 r_scbond_other 4.218 r_mcbond_it 3.34 r_mcbond_other 3.23 r_angle_refined_deg 1.482 r_angle_other_deg 0.489 r_nbd_refined 0.202 r_nbd_other 0.198 r_symmetry_nbd_other 0.192 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.142 r_symmetry_nbd_refined 0.124 r_symmetry_xyhbond_nbd_refined 0.1 r_ncsr_local_group_1 0.091 r_ncsr_local_group_2 0.088 r_symmetry_nbtor_other 0.086 r_chiral_restr 0.066 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5607 Nucleic Acid Atoms Solvent Atoms 306 Heterogen Atoms 196
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing