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EGFR wild type in complex with 26313
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8SC7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.6 273 25 mM HEPES pH 8, 150 mM NaCl, 10 % glycerol, 1 mM DTT 85mM Tris pH 7.6, 140 mM acetate, 23.5 % Polyethylene glycol 4,000, 18% glycerol
Crystal Properties Matthews coefficient Solvent content 3.43 64.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 145.59 α = 90 b = 145.59 β = 90 c = 145.59 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 173 PIXEL DECTRIS PILATUS 6M 2023-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.92 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.99 46.04 100 0.451 0.998 9.4 40.9 10543
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.99 3.17 100 6.905 0.38 0.8 41.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.991 46.04 10543 500 99.962 0.202 0.2002 0.2019 0.2438 0.2256
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26 r_lrange_it 24.379 r_lrange_other 24.378 r_dihedral_angle_other_2_deg 18.925 r_scangle_it 17.275 r_scangle_other 17.271 r_dihedral_angle_3_deg 17.119 r_mcangle_it 16.441 r_mcangle_other 16.441 r_dihedral_angle_6_deg 15.095
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26 r_lrange_it 24.379 r_lrange_other 24.378 r_dihedral_angle_other_2_deg 18.925 r_scangle_it 17.275 r_scangle_other 17.271 r_dihedral_angle_3_deg 17.119 r_mcangle_it 16.441 r_mcangle_other 16.441 r_dihedral_angle_6_deg 15.095 r_scbond_it 11.225 r_scbond_other 11.221 r_mcbond_it 10.862 r_mcbond_other 10.818 r_dihedral_angle_1_deg 8.326 r_angle_refined_deg 1.729 r_symmetry_nbd_refined 1.066 r_angle_other_deg 0.602 r_nbd_other 0.42 r_nbd_refined 0.258 r_symmetry_nbd_other 0.213 r_xyhbond_nbd_refined 0.194 r_nbtor_refined 0.193 r_symmetry_nbtor_other 0.085 r_chiral_restr 0.079 r_symmetry_xyhbond_nbd_other 0.055 r_symmetry_xyhbond_nbd_refined 0.021 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2601 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing