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EGFR wild type incomplex with 26007
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 8SC7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.6 293 25 mM HEPES pH 8, 150 mM NaCl, 10 % glycerol, 1 mM DTT 85mM Tris pH 7.6, 140 mM acetate, 23.5 % Polyethylene glycol 4,000, 18% glycerol
Crystal Properties Matthews coefficient Solvent content 3.39 63.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.89 α = 90 b = 144.89 β = 90 c = 144.89 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 173 PIXEL DECTRIS PILATUS 6M 2023-12-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.92 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 45.86 100 0.041 1 19.2 40.5 15709
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.72 100 6.6 0.35 42.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.601 45.86 15709 709 99.975 0.187 0.1842 0.1842 0.2447 0.2446 99.265
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_other_2_deg 27.625 r_dihedral_angle_2_deg 24.511 r_lrange_it 21.667 r_lrange_other 21.665 r_dihedral_angle_3_deg 16.912 r_scangle_it 16.315 r_scangle_other 16.311 r_dihedral_angle_6_deg 15.858 r_mcangle_it 15.66 r_mcangle_other 15.657
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_other_2_deg 27.625 r_dihedral_angle_2_deg 24.511 r_lrange_it 21.667 r_lrange_other 21.665 r_dihedral_angle_3_deg 16.912 r_scangle_it 16.315 r_scangle_other 16.311 r_dihedral_angle_6_deg 15.858 r_mcangle_it 15.66 r_mcangle_other 15.657 r_scbond_it 10.907 r_scbond_other 10.903 r_mcbond_it 10.85 r_mcbond_other 10.763 r_dihedral_angle_1_deg 8.949 r_angle_refined_deg 1.899 r_angle_other_deg 0.653 r_symmetry_nbd_refined 0.336 r_nbd_refined 0.249 r_xyhbond_nbd_refined 0.217 r_symmetry_nbd_other 0.204 r_nbd_other 0.196 r_nbtor_refined 0.19 r_symmetry_xyhbond_nbd_refined 0.185 r_symmetry_nbtor_other 0.085 r_chiral_restr 0.084 r_symmetry_xyhbond_nbd_other 0.05 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2601 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing