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Androgen Receptor ligand-binding domain in complex with 11-ketodihydrotestosterone
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1T7T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1 M HEPES pH 7.8, 0.7 M sodium citrate, 15 mM spermidine
Crystal Properties Matthews coefficient Solvent content 2.19 43.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.103 α = 90 b = 66.465 β = 90 c = 70.724 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2023-11-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.91 43.01 99.8 0.083 0.091 0.035 0.999 9 6.6 20360
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.91 1.96 97.9 2.808 3.102 1.292 0.42 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.91 43.01 19495 817 99.81 0.19784 0.19543 0.1986 0.25761 0.2602 RANDOM 48.304
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.5 -3.24 -1.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.728 r_dihedral_angle_4_deg 18.605 r_dihedral_angle_3_deg 15.646 r_long_range_B_refined 9.726 r_scbond_it 6.058 r_dihedral_angle_1_deg 5.35 r_mcangle_it 5.036 r_mcbond_it 3.851 r_angle_refined_deg 1.467 r_chiral_restr 0.105
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.728 r_dihedral_angle_4_deg 18.605 r_dihedral_angle_3_deg 15.646 r_long_range_B_refined 9.726 r_scbond_it 6.058 r_dihedral_angle_1_deg 5.35 r_mcangle_it 5.036 r_mcbond_it 3.851 r_angle_refined_deg 1.467 r_chiral_restr 0.105 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2015 Nucleic Acid Atoms Solvent Atoms 31 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement Aimless data scaling iMOSFLM data reduction MOLREP phasing