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NavMs F208L bound to sevoflurane
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6SX5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 30.8% PEG300
100mM HEPES
100mM NaCl
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.703 α = 90 b = 108.703 β = 90 c = 209.157 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL DECTRIS EIGER X 16M Toroidal mirror 2023-05-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97626 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 48.2 100 1 28.6 20 32204
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 9 100 0.973 4.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.2 48.2 32202 1656 99.953 0.223 0.2214 0.2221 0.252 0.2515 66.684
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.31 2.31 -4.619
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.432 r_lrange_it 13.968 r_dihedral_angle_6_deg 13.437 r_scangle_it 12.664 r_mcangle_it 10.296 r_scbond_it 9.274 r_mcbond_it 7.807 r_dihedral_angle_1_deg 5.873 r_dihedral_angle_2_deg 5.635 r_angle_refined_deg 2.127
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.432 r_lrange_it 13.968 r_dihedral_angle_6_deg 13.437 r_scangle_it 12.664 r_mcangle_it 10.296 r_scbond_it 9.274 r_mcbond_it 7.807 r_dihedral_angle_1_deg 5.873 r_dihedral_angle_2_deg 5.635 r_angle_refined_deg 2.127 r_nbtor_refined 0.32 r_nbd_refined 0.236 r_symmetry_nbd_refined 0.184 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.143 r_symmetry_xyhbond_nbd_refined 0.127 r_bond_refined_d 0.013 r_gen_planes_refined 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1966 Nucleic Acid Atoms Solvent Atoms 51 Heterogen Atoms 92
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing