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KRAS in complex with DARPin 784_F5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4YDW experimental model PDB 5F2E
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277.15 Crystals grew within 25 days in 0.2 M potassium sodium tartrate, 20% w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.74 55.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.32 α = 90 b = 152.83 β = 90 c = 149.15 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2016-03-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 48 100 0.082 0.088 0.999 14.28 7.2 173930
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 2.242 2.413 0.361
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 47.28 86336 4544 99.95 0.17249 0.17101 0.1823 0.20063 0.2087 RANDOM 63.756
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.22 -0.25
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.028 r_dihedral_angle_2_deg 10.52 r_long_range_B_refined 9.352 r_long_range_B_other 9.314 r_dihedral_angle_1_deg 6.086 r_scangle_other 5.604 r_scbond_it 4.102 r_scbond_other 4.095 r_mcangle_it 3.679 r_mcangle_other 3.679
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.028 r_dihedral_angle_2_deg 10.52 r_long_range_B_refined 9.352 r_long_range_B_other 9.314 r_dihedral_angle_1_deg 6.086 r_scangle_other 5.604 r_scbond_it 4.102 r_scbond_other 4.095 r_mcangle_it 3.679 r_mcangle_other 3.679 r_mcbond_it 2.539 r_mcbond_other 2.539 r_angle_refined_deg 1.704 r_angle_other_deg 0.595 r_chiral_restr 0.085 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7825 Nucleic Acid Atoms Solvent Atoms 564 Heterogen Atoms 288
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling XDS data reduction PHASER phasing