9GSK | pdb_00009gsk

CSP1 H36A plus imidazole

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293.5	20 mM D-Glucose, 20 mM D-Mannose, 20 mM D-Galactose, 20 mM LFucose, 20 mM D-Xylose, 20 mM N-Acetyl-D-Glucosamine, 100 mM Imidazol/MES pH 6.5, 40% Glycerol and 20% PEG 400.

Crystal Properties
Matthews coefficient	Solvent content
2.75	55.23

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 60.42	α = 90
b = 98.28	β = 90
c = 83.43	γ = 90

Symmetry
Space Group	C 2 2 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2017-07-05	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04	0.97949	Diamond	I04

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.3	51.47	100	0.057	0.062	0.024	0.999	16.5	12.9		61289

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	1.3	1.32	100		2.232	2.42	0.931	0.486	1.2	13.1

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MIR	FREE R-VALUE	1.3	51.47	61257	3118	99.982	0.171	0.1709	0.171	0.1806	0.1808	23.281

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.893			-0.427		-0.466

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.64
r_dihedral_angle_3_deg	12.599
r_dihedral_angle_2_deg	9.948
r_scangle_it	5.294
r_lrange_it	4.986
r_dihedral_angle_1_deg	4.293
r_scbond_it	3.757
r_mcangle_it	2.697
r_angle_refined_deg	2.151
r_mcbond_it	1.989
r_nbtor_refined	0.304
r_symmetry_nbd_refined	0.251
r_metal_ion_refined	0.217
r_nbd_refined	0.212
r_symmetry_metal_ion_refined	0.194
r_chiral_restr	0.126
r_symmetry_xyhbond_nbd_refined	0.118
r_xyhbond_nbd_refined	0.096
r_ncsr_local_group_1	0.068
r_bond_refined_d	0.012
r_gen_planes_refined	0.009

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1546
Nucleic Acid Atoms
Solvent Atoms	122
Heterogen Atoms	37

Software

Software
Software Name	Purpose
REFMAC	refinement
REFMAC	refinement