9GS1 | pdb_00009gs1

Crystal structure of Arabidopsis thaliana Acyl-ACP Thioesterase (At-FatA) complexed with Oxaziclomefone

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2OWN

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		298	1.6M Ammonium sulphate, 0.1M sodium acetate pH 4.8

Crystal Properties
Matthews coefficient	Solvent content
2.21	44.33

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 96.154	α = 90
b = 97.839	β = 90
c = 126.318	γ = 90

Symmetry
Space Group	I 2 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	OXFORD ONYX CCD		2015-12-15	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SEALED TUBE	OTHER	1.54184

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.9	20.42	99.7	0.997	11.4	4.2		47041

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.9	1.94	98.7		0.709		2.4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.9	20.42	46906	2336	99.308	0.238	0.2361	0.2425	0.2716	0.2721	27.062

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.28			-2.187		1.907

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.853
r_dihedral_angle_4_deg	16.044
r_dihedral_angle_3_deg	14.441
r_dihedral_angle_1_deg	6.665
r_lrange_it	6.486
r_lrange_other	6.485
r_scangle_it	4.689
r_scangle_other	4.688
r_mcangle_it	3.311
r_mcangle_other	3.31
r_scbond_it	3.018
r_scbond_other	3.018
r_angle_other_deg	2.299
r_mcbond_it	2.231
r_mcbond_other	2.228
r_angle_refined_deg	1.52
r_nbd_other	0.232
r_symmetry_nbd_other	0.214
r_nbd_refined	0.205
r_symmetry_nbd_refined	0.184
r_nbtor_refined	0.163
r_xyhbond_nbd_refined	0.148
r_symmetry_xyhbond_nbd_refined	0.1
r_ncsr_local_group_1	0.09
r_symmetry_xyhbond_nbd_other	0.079
r_symmetry_nbtor_other	0.074
r_chiral_restr	0.07
r_bond_other_d	0.035
r_gen_planes_other	0.011
r_bond_refined_d	0.009
r_gen_planes_refined	0.008

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	4151
Nucleic Acid Atoms
Solvent Atoms	158
Heterogen Atoms	66

Software

Software
Software Name	Purpose
REFMAC	refinement
CrysalisPro	data reduction
Aimless	data scaling
MOLREP	phasing