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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog m5(11,5)-(E)-OH
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 18% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5, 10% glycol
Crystal Properties Matthews coefficient Solvent content 2.44 49.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.056 α = 90 b = 49.056 β = 90 c = 196.83 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2024-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 42.48 99.2 0.053 0.058 0.023 1 18.8 10.8 31151
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.73 90.2 1.406 1.667 0.871 0.407 1.1 6.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 42.48 31045 1500 98.989 0.242 0.2398 0.238 0.2874 0.2875 43.353
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.342 -0.171 -0.342 1.108
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.432 r_dihedral_angle_6_deg 15.95 r_dihedral_angle_3_deg 13.528 r_dihedral_angle_1_deg 8.824 r_lrange_it 5.678 r_lrange_other 5.657 r_scangle_it 4.188 r_scangle_other 4.187 r_mcangle_it 3.521 r_mcangle_other 3.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.432 r_dihedral_angle_6_deg 15.95 r_dihedral_angle_3_deg 13.528 r_dihedral_angle_1_deg 8.824 r_lrange_it 5.678 r_lrange_other 5.657 r_scangle_it 4.188 r_scangle_other 4.187 r_mcangle_it 3.521 r_mcangle_other 3.52 r_scbond_it 3.19 r_scbond_other 3.189 r_mcbond_it 2.863 r_mcbond_other 2.863 r_angle_refined_deg 2.413 r_dihedral_angle_other_2_deg 1.802 r_angle_other_deg 0.808 r_nbd_refined 0.214 r_symmetry_nbd_other 0.204 r_nbtor_refined 0.188 r_xyhbond_nbd_refined 0.156 r_nbd_other 0.146 r_symmetry_xyhbond_nbd_other 0.138 r_ncsr_local_group_1 0.132 r_chiral_restr 0.121 r_symmetry_nbd_refined 0.115 r_symmetry_nbtor_other 0.099 r_symmetry_xyhbond_nbd_refined 0.058 r_bond_refined_d 0.015 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1851 Nucleic Acid Atoms Solvent Atoms 91 Heterogen Atoms 80
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing