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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog m5(10,8)-(E)-OH
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 22% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.26 45.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.257 α = 90 b = 48.257 β = 90 c = 187.938 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 X 9M 2023-11-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.873129 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 187.94 100 0.087 0.094 0.035 0.998 20.3 12.3 8472
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.72 100 0.22 0.237 0.087 0.99 10.4 13.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 62.725 8411 452 99.858 0.245 0.2418 0.2408 0.3076 0.3073 48.569
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.755 -0.878 -1.755 5.694
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.38 r_dihedral_angle_3_deg 16.415 r_dihedral_angle_6_deg 15.356 r_dihedral_angle_1_deg 9.095 r_dihedral_angle_other_2_deg 6.264 r_lrange_it 5.988 r_lrange_other 5.987 r_mcangle_it 4.203 r_mcangle_other 4.202 r_scangle_it 3.881
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.38 r_dihedral_angle_3_deg 16.415 r_dihedral_angle_6_deg 15.356 r_dihedral_angle_1_deg 9.095 r_dihedral_angle_other_2_deg 6.264 r_lrange_it 5.988 r_lrange_other 5.987 r_mcangle_it 4.203 r_mcangle_other 4.202 r_scangle_it 3.881 r_scangle_other 3.88 r_mcbond_it 2.751 r_mcbond_other 2.722 r_scbond_it 2.511 r_scbond_other 2.509 r_angle_refined_deg 2.357 r_angle_other_deg 0.781 r_nbd_refined 0.228 r_symmetry_nbd_other 0.215 r_nbtor_refined 0.194 r_symmetry_nbd_refined 0.19 r_xyhbond_nbd_refined 0.182 r_nbd_other 0.18 r_ncsr_local_group_1 0.159 r_symmetry_xyhbond_nbd_refined 0.118 r_chiral_restr 0.109 r_symmetry_nbtor_other 0.098 r_symmetry_xyhbond_nbd_other 0.083 r_bond_refined_d 0.012 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1768 Nucleic Acid Atoms Solvent Atoms 14 Heterogen Atoms 82
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing