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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog m5(2,4)-H2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 18% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.37 48.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.71 α = 90 b = 48.71 β = 90 c = 193.946 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2023-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 42.18 99.9 0.109 0.122 0.053 0.998 13.6 9.6 9945
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.6 100 0.417 0.459 0.19 0.955 4.9 10.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 42.18 9899 483 99.849 0.231 0.2282 0.2267 0.2856 0.2865 44.981
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.612 -1.306 -2.612 8.474
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.972 r_dihedral_angle_3_deg 14.734 r_dihedral_angle_6_deg 13.328 r_dihedral_angle_1_deg 9.115 r_lrange_it 3.786 r_lrange_other 3.785 r_scangle_it 2.328 r_scangle_other 2.327 r_mcangle_it 2.205 r_mcangle_other 2.204
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.972 r_dihedral_angle_3_deg 14.734 r_dihedral_angle_6_deg 13.328 r_dihedral_angle_1_deg 9.115 r_lrange_it 3.786 r_lrange_other 3.785 r_scangle_it 2.328 r_scangle_other 2.327 r_mcangle_it 2.205 r_mcangle_other 2.204 r_angle_refined_deg 1.51 r_scbond_it 1.4 r_scbond_other 1.399 r_mcbond_it 1.361 r_mcbond_other 1.358 r_angle_other_deg 0.499 r_symmetry_xyhbond_nbd_refined 0.259 r_nbd_refined 0.203 r_symmetry_nbd_other 0.196 r_nbtor_refined 0.178 r_symmetry_nbd_refined 0.168 r_xyhbond_nbd_refined 0.155 r_nbd_other 0.129 r_symmetry_nbtor_other 0.091 r_ncsr_local_group_1 0.078 r_chiral_restr 0.065 r_symmetry_xyhbond_nbd_other 0.017 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1877 Nucleic Acid Atoms Solvent Atoms 27 Heterogen Atoms 76
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing