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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog m5(6,4)-(E)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 18% PEG3350, 0.2M ammonium thiocyanate, 0.1M HEPES-NaOH pH 7.5, 10% glycol
Crystal Properties Matthews coefficient Solvent content 2.42 49.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.964 α = 90 b = 48.964 β = 90 c = 196.151 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2023-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 49.04 100 0.056 0.062 0.026 0.999 23.5 10.1 10160
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.6 100 0.223 0.245 0.101 0.988 8.9 10.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 42.44 10107 480 99.911 0.225 0.2226 0.2222 0.2806 0.2785 57
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.476 -0.238 -0.476 1.545
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.442 r_dihedral_angle_6_deg 15.394 r_dihedral_angle_3_deg 14.273 r_dihedral_angle_1_deg 8.967 r_lrange_it 6.737 r_lrange_other 6.733 r_scangle_it 4.747 r_scangle_other 4.745 r_mcangle_other 4.688 r_mcangle_it 4.686
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.442 r_dihedral_angle_6_deg 15.394 r_dihedral_angle_3_deg 14.273 r_dihedral_angle_1_deg 8.967 r_lrange_it 6.737 r_lrange_other 6.733 r_scangle_it 4.747 r_scangle_other 4.745 r_mcangle_other 4.688 r_mcangle_it 4.686 r_scbond_it 3.314 r_scbond_other 3.312 r_mcbond_it 3.228 r_mcbond_other 3.217 r_angle_refined_deg 2.114 r_angle_other_deg 0.671 r_nbd_refined 0.213 r_symmetry_nbd_other 0.201 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.172 r_symmetry_nbd_refined 0.152 r_nbd_other 0.134 r_symmetry_nbtor_other 0.095 r_ncsr_local_group_1 0.093 r_chiral_restr 0.089 r_bond_refined_d 0.01 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1839 Nucleic Acid Atoms Solvent Atoms 35 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing