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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog p5(2,2)-Diol-IV
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 24% PEG3350, 0.2M ammonium thiocyanate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.34 47.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.742 α = 90 b = 48.742 β = 90 c = 191.029 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2022-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 47.76 100 0.056 0.062 0.026 0.999 18.3 10.4 20813
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.93 1.98 100 1.891 2.076 0.853 0.523 1.3 11.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.93 41.252 20750 1058 99.947 0.239 0.237 0.2381 0.2684 0.2681 50.933
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.878 -0.439 -0.878 2.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.149 r_dihedral_angle_6_deg 15.185 r_dihedral_angle_3_deg 12.753 r_dihedral_angle_1_deg 8.023 r_lrange_other 6.438 r_lrange_it 6.436 r_scangle_it 4.837 r_scangle_other 4.835 r_mcangle_other 4.81 r_mcangle_it 4.795
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 24.149 r_dihedral_angle_6_deg 15.185 r_dihedral_angle_3_deg 12.753 r_dihedral_angle_1_deg 8.023 r_lrange_other 6.438 r_lrange_it 6.436 r_scangle_it 4.837 r_scangle_other 4.835 r_mcangle_other 4.81 r_mcangle_it 4.795 r_mcbond_it 3.742 r_mcbond_other 3.741 r_scbond_it 3.688 r_scbond_other 3.686 r_angle_refined_deg 2.016 r_angle_other_deg 0.664 r_symmetry_nbd_refined 0.236 r_symmetry_nbd_other 0.205 r_nbd_refined 0.198 r_nbd_other 0.188 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.147 r_symmetry_xyhbond_nbd_refined 0.139 r_ncsr_local_group_1 0.118 r_chiral_restr 0.096 r_symmetry_nbtor_other 0.093 r_bond_refined_d 0.011 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1826 Nucleic Acid Atoms Solvent Atoms 37 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing