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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog p5(2,2)-(Z)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 20% PEG3350, 0.2M ammonium thiocyanate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.4 48.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.886 α = 90 b = 48.886 β = 90 c = 194.679 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2022-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 48.67 100 0.031 0.034 0.014 1 33.5 10.5 19232
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.05 100 0.492 0.539 0.22 0.932 4.9 11.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 41.404 19153 1011 99.849 0.241 0.2386 0.2378 0.2799 0.2797 57.763
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.343 -0.172 -0.343 1.113
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.331 r_dihedral_angle_3_deg 12.53 r_dihedral_angle_1_deg 8.2 r_lrange_it 5.794 r_lrange_other 5.794 r_dihedral_angle_2_deg 5.484 r_scangle_it 3.643 r_scangle_other 3.642 r_mcangle_it 3.551 r_mcangle_other 3.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.331 r_dihedral_angle_3_deg 12.53 r_dihedral_angle_1_deg 8.2 r_lrange_it 5.794 r_lrange_other 5.794 r_dihedral_angle_2_deg 5.484 r_scangle_it 3.643 r_scangle_other 3.642 r_mcangle_it 3.551 r_mcangle_other 3.55 r_scbond_it 2.52 r_scbond_other 2.519 r_mcbond_it 2.496 r_mcbond_other 2.495 r_chiral_restr_other 1.816 r_angle_refined_deg 1.787 r_angle_other_deg 1.211 r_nbd_refined 0.204 r_symmetry_nbd_other 0.2 r_nbtor_refined 0.18 r_nbd_other 0.166 r_symmetry_nbd_refined 0.157 r_xyhbond_nbd_refined 0.154 r_ncsr_local_group_1 0.107 r_symmetry_xyhbond_nbd_refined 0.103 r_symmetry_nbtor_other 0.09 r_chiral_restr 0.08 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.006 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1847 Nucleic Acid Atoms Solvent Atoms 52 Heterogen Atoms 70
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing