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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog p5(2,2)-H2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 20% PEG3350, 0.2M ammonium thiocyanate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.32 47.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.44 α = 90 b = 48.44 β = 90 c = 192.239 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2022-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.16 48.06 99.9 0.112 0.124 0.054 0.997 10.7 9.4 14911
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.16 2.23 99.2 1.124 1.278 0.599 0.536 1.6 8.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.16 41.019 14855 716 99.832 0.229 0.2267 0.2263 0.2762 0.2739 48.473
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.601 -0.3 -0.601 1.949
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.076 r_dihedral_angle_3_deg 13.75 r_dihedral_angle_1_deg 8.085 r_lrange_it 5.306 r_lrange_other 5.304 r_dihedral_angle_2_deg 5.279 r_mcangle_it 3.809 r_mcangle_other 3.807 r_scangle_it 3.688 r_scangle_other 3.687
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.076 r_dihedral_angle_3_deg 13.75 r_dihedral_angle_1_deg 8.085 r_lrange_it 5.306 r_lrange_other 5.304 r_dihedral_angle_2_deg 5.279 r_mcangle_it 3.809 r_mcangle_other 3.807 r_scangle_it 3.688 r_scangle_other 3.687 r_mcbond_it 2.596 r_mcbond_other 2.596 r_scbond_it 2.527 r_scbond_other 2.526 r_angle_refined_deg 1.804 r_chiral_restr_other 1.395 r_angle_other_deg 1.089 r_nbd_other 0.203 r_nbd_refined 0.2 r_symmetry_nbd_other 0.2 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.139 r_ncsr_local_group_1 0.116 r_symmetry_nbd_refined 0.106 r_symmetry_xyhbond_nbd_refined 0.096 r_symmetry_nbtor_other 0.087 r_chiral_restr 0.082 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.005 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1847 Nucleic Acid Atoms Solvent Atoms 37 Heterogen Atoms 70
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing