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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog p5(2,1)-(E)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 20% PEG3350, 0.2M ammonium thiocyanate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.31 46.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.482 α = 90 b = 48.482 β = 90 c = 191.085 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2022-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.02 41.99 100 0.075 0.084 0.036 0.999 13.2 10 18014
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.02 2.07 100 1.336 1.468 0.602 0.53 1.5 11
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 41.99 12317 627 99.927 0.223 0.2206 0.2637 0.2692 54.973
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.117 -0.559 -1.117 3.625
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.102 r_dihedral_angle_6_deg 15.033 r_dihedral_angle_3_deg 14.26 r_dihedral_angle_1_deg 7.829 r_lrange_it 7.582 r_lrange_other 7.578 r_scangle_it 5.976 r_scangle_other 5.974 r_mcangle_it 5.648 r_mcangle_other 5.647
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.102 r_dihedral_angle_6_deg 15.033 r_dihedral_angle_3_deg 14.26 r_dihedral_angle_1_deg 7.829 r_lrange_it 7.582 r_lrange_other 7.578 r_scangle_it 5.976 r_scangle_other 5.974 r_mcangle_it 5.648 r_mcangle_other 5.647 r_scbond_it 4.297 r_scbond_other 4.295 r_mcbond_it 4.115 r_mcbond_other 4.109 r_dihedral_angle_other_2_deg 2.782 r_angle_refined_deg 2.065 r_angle_other_deg 0.678 r_nbd_refined 0.207 r_symmetry_nbd_other 0.205 r_nbd_other 0.202 r_symmetry_nbd_refined 0.191 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.164 r_ncsr_local_group_1 0.115 r_symmetry_nbtor_other 0.092 r_chiral_restr 0.091 r_symmetry_xyhbond_nbd_refined 0.039 r_bond_refined_d 0.011 r_symmetry_xyhbond_nbd_other 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1833 Nucleic Acid Atoms Solvent Atoms 25 Heterogen Atoms 68
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing