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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog p5(2,2)-(E)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 22% PEG3350, 0.2M ammonium thiocyanate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.38 48.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.802 α = 90 b = 48.802 β = 90 c = 193.96 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2022-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 48.49 100 0.043 0.048 0.02 1 23.4 10.6 21173
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.93 1.98 100 1.224 1.343 0.548 0.746 2.1 11.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.93 35.401 21095 1026 99.886 0.241 0.2386 0.238 0.2766 0.2761 57.577
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.354 -0.177 -0.354 1.149
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.487 r_dihedral_angle_2_deg 14.088 r_dihedral_angle_3_deg 12.944 r_dihedral_angle_1_deg 8.222 r_lrange_other 6.237 r_lrange_it 6.231 r_scangle_it 4.015 r_scangle_other 4.013 r_mcangle_it 3.904 r_mcangle_other 3.903
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.487 r_dihedral_angle_2_deg 14.088 r_dihedral_angle_3_deg 12.944 r_dihedral_angle_1_deg 8.222 r_lrange_other 6.237 r_lrange_it 6.231 r_scangle_it 4.015 r_scangle_other 4.013 r_mcangle_it 3.904 r_mcangle_other 3.903 r_mcbond_it 2.888 r_scbond_it 2.888 r_scbond_other 2.887 r_mcbond_other 2.886 r_angle_refined_deg 1.974 r_chiral_restr_other 1.79 r_angle_other_deg 1.301 r_nbd_other 0.249 r_symmetry_nbd_other 0.203 r_symmetry_nbd_refined 0.202 r_nbd_refined 0.201 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.148 r_ncsr_local_group_1 0.112 r_chiral_restr 0.093 r_symmetry_nbtor_other 0.091 r_symmetry_xyhbond_nbd_refined 0.072 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.006 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1849 Nucleic Acid Atoms Solvent Atoms 60 Heterogen Atoms 70
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing