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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog p5(3,1)-(E)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 20% PEG3350, 0.2M ammonium thiocyanate, 0.1M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.35 47.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.667 α = 90 b = 48.667 β = 90 c = 192.723 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2022-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 48.18 100 0.037 0.04 0.017 1 29.2 10.6 25641
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.84 100 0.525 0.577 0.239 0.926 4.3 10.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 42.182 25574 1300 99.949 0.23 0.229 0.2466 0.2497 40.092
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 -0.02 -0.04 0.131
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.945 r_dihedral_angle_3_deg 11.371 r_dihedral_angle_2_deg 10.108 r_dihedral_angle_1_deg 7.67 r_lrange_other 6.197 r_lrange_it 6.173 r_scangle_it 3.891 r_scangle_other 3.89 r_mcangle_it 3.458 r_mcangle_other 3.457
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 13.945 r_dihedral_angle_3_deg 11.371 r_dihedral_angle_2_deg 10.108 r_dihedral_angle_1_deg 7.67 r_lrange_other 6.197 r_lrange_it 6.173 r_scangle_it 3.891 r_scangle_other 3.89 r_mcangle_it 3.458 r_mcangle_other 3.457 r_scbond_it 2.866 r_scbond_other 2.864 r_mcbond_it 2.582 r_mcbond_other 2.581 r_angle_refined_deg 2.123 r_chiral_restr_other 1.705 r_angle_other_deg 1.236 r_nbd_refined 0.204 r_symmetry_nbd_other 0.197 r_nbtor_refined 0.18 r_xyhbond_nbd_refined 0.151 r_nbd_other 0.135 r_symmetry_nbd_refined 0.124 r_ncsr_local_group_1 0.12 r_chiral_restr 0.104 r_symmetry_xyhbond_nbd_refined 0.097 r_symmetry_nbtor_other 0.095 r_bond_refined_d 0.014 r_gen_planes_refined 0.01 r_bond_other_d 0.006 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1829 Nucleic Acid Atoms Solvent Atoms 133 Heterogen Atoms 72
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing