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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog p5(1,1)-(E)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 24% PEG3350, 0.2M ammonium thiocyanate, 0.1M HEPES-NaOH pH 7.5,
Crystal Properties Matthews coefficient Solvent content 2.39 48.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.87 α = 90 b = 48.87 β = 90 c = 193.969 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2022-03-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 48.49 100 0.036 0.04 0.017 1 32.1 10.3 12744
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.39 100 0.291 0.322 0.136 0.974 7.4 10.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.301 42.359 12691 660 99.913 0.234 0.2309 0.2306 0.2879 0.2867 65.231
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.527 -0.263 -0.527 1.709
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.041 r_dihedral_angle_6_deg 14.929 r_dihedral_angle_1_deg 9.355 r_lrange_it 7.414 r_lrange_other 7.414 r_mcangle_it 5.264 r_mcangle_other 5.263 r_scangle_it 5.147 r_scangle_other 5.145 r_mcbond_it 3.749
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.041 r_dihedral_angle_6_deg 14.929 r_dihedral_angle_1_deg 9.355 r_lrange_it 7.414 r_lrange_other 7.414 r_mcangle_it 5.264 r_mcangle_other 5.263 r_scangle_it 5.147 r_scangle_other 5.145 r_mcbond_it 3.749 r_mcbond_other 3.749 r_scbond_it 3.57 r_scbond_other 3.568 r_dihedral_angle_2_deg 3.369 r_angle_refined_deg 2.369 r_chiral_restr_other 1.738 r_angle_other_deg 1.122 r_nbd_refined 0.216 r_symmetry_nbd_other 0.202 r_xyhbond_nbd_refined 0.201 r_symmetry_nbd_refined 0.189 r_nbtor_refined 0.186 r_nbd_other 0.174 r_symmetry_xyhbond_nbd_refined 0.131 r_ncsr_local_group_1 0.125 r_chiral_restr 0.108 r_symmetry_nbtor_other 0.096 r_bond_refined_d 0.013 r_gen_planes_refined 0.01 r_bond_other_d 0.006 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1818 Nucleic Acid Atoms Solvent Atoms 27 Heterogen Atoms 66
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing