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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 12f/l
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 18% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5, 10% glycol
Crystal Properties Matthews coefficient Solvent content 2.45 49.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.193 α = 90 b = 49.193 β = 90 c = 196.443 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2024-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 49.11 100 0.061 0.066 0.026 1 20.8 11.7 26718
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.84 100 1.431 1.557 0.607 0.642 1.8 12.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.8 35.735 26645 1399 99.962 0.225 0.2226 0.2219 0.2611 0.2598 40.03
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.224 -0.112 -0.224 0.726
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.218 r_dihedral_angle_6_deg 16.149 r_dihedral_angle_3_deg 11.788 r_dihedral_angle_1_deg 8.708 r_lrange_it 6.363 r_lrange_other 6.351 r_scangle_it 4.595 r_scangle_other 4.593 r_mcangle_it 4.157 r_mcangle_other 4.156
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.218 r_dihedral_angle_6_deg 16.149 r_dihedral_angle_3_deg 11.788 r_dihedral_angle_1_deg 8.708 r_lrange_it 6.363 r_lrange_other 6.351 r_scangle_it 4.595 r_scangle_other 4.593 r_mcangle_it 4.157 r_mcangle_other 4.156 r_scbond_it 3.369 r_scbond_other 3.368 r_mcbond_it 3.197 r_mcbond_other 3.195 r_angle_refined_deg 2.336 r_angle_other_deg 0.788 r_symmetry_xyhbond_nbd_refined 0.274 r_nbd_refined 0.213 r_symmetry_nbd_other 0.196 r_nbtor_refined 0.185 r_symmetry_xyhbond_nbd_other 0.176 r_nbd_other 0.153 r_xyhbond_nbd_refined 0.147 r_ncsr_local_group_1 0.128 r_chiral_restr 0.119 r_symmetry_nbd_refined 0.113 r_symmetry_nbtor_other 0.093 r_bond_refined_d 0.015 r_gen_planes_refined 0.014 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1874 Nucleic Acid Atoms Solvent Atoms 109 Heterogen Atoms 84
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing