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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 12c/o
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 14% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5, 10% glycol
Crystal Properties Matthews coefficient Solvent content 2.42 49.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.906 α = 90 b = 48.906 β = 90 c = 196.343 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2024-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 49.09 99.3 0.105 0.117 0.051 0.998 11.1 8.2 16713
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 2.16 98.1 1.321 1.511 0.704 0.687 1.5 6.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 41.436 16657 815 99.226 0.22 0.217 0.214 0.2777 0.2703 37.708
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.075 -0.538 -1.075 3.488
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.827 r_dihedral_angle_6_deg 14.952 r_dihedral_angle_3_deg 11.354 r_dihedral_angle_1_deg 8.223 r_lrange_other 5.017 r_lrange_it 5.015 r_scangle_it 3.29 r_scangle_other 3.289 r_mcangle_other 2.899 r_mcangle_it 2.898
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.827 r_dihedral_angle_6_deg 14.952 r_dihedral_angle_3_deg 11.354 r_dihedral_angle_1_deg 8.223 r_lrange_other 5.017 r_lrange_it 5.015 r_scangle_it 3.29 r_scangle_other 3.289 r_mcangle_other 2.899 r_mcangle_it 2.898 r_scbond_it 2.132 r_scbond_other 2.131 r_mcbond_it 2 r_mcbond_other 2 r_angle_refined_deg 1.741 r_angle_other_deg 0.568 r_symmetry_xyhbond_nbd_refined 0.325 r_nbd_refined 0.212 r_symmetry_nbd_other 0.196 r_nbtor_refined 0.177 r_xyhbond_nbd_refined 0.168 r_nbd_other 0.135 r_symmetry_nbd_refined 0.133 r_symmetry_nbtor_other 0.088 r_ncsr_local_group_1 0.079 r_chiral_restr 0.075 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1856 Nucleic Acid Atoms Solvent Atoms 61 Heterogen Atoms 82
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing