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The FK1 domain of FKBP51 in complex with the macrocyclic SAFit analog 12c/n
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TW7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 14% PEG3350, 0.2M ammonium acetate, 0.1M HEPES-NaOH pH 7.5, 10% glycol
Crystal Properties Matthews coefficient Solvent content 2.42 49.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.04 α = 90 b = 49.04 β = 90 c = 195.25 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2024-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.918400 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.68 48.81 99.2 0.05 0.055 0.022 1 21.4 11.4 32015
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.68 1.71 90.5 0.823 0.937 0.437 0.734 2.2 8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.68 42.506 31939 1709 99.112 0.209 0.2067 0.2395 0.2458 34.787
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.084 -0.042 -0.084 0.273
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.447 r_dihedral_angle_6_deg 15.547 r_dihedral_angle_3_deg 12.331 r_dihedral_angle_1_deg 7.928 r_lrange_other 6.151 r_lrange_it 6.144 r_scangle_it 4.161 r_scangle_other 4.16 r_mcangle_it 3.242 r_mcangle_other 3.242
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.447 r_dihedral_angle_6_deg 15.547 r_dihedral_angle_3_deg 12.331 r_dihedral_angle_1_deg 7.928 r_lrange_other 6.151 r_lrange_it 6.144 r_scangle_it 4.161 r_scangle_other 4.16 r_mcangle_it 3.242 r_mcangle_other 3.242 r_scbond_it 2.954 r_scbond_other 2.952 r_mcbond_it 2.37 r_mcbond_other 2.365 r_angle_refined_deg 2.203 r_angle_other_deg 0.76 r_symmetry_nbd_refined 0.359 r_symmetry_xyhbond_nbd_refined 0.304 r_nbd_refined 0.22 r_symmetry_nbd_other 0.194 r_nbtor_refined 0.185 r_xyhbond_nbd_refined 0.168 r_nbd_other 0.158 r_chiral_restr 0.118 r_ncsr_local_group_1 0.104 r_symmetry_nbtor_other 0.094 r_bond_refined_d 0.014 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1879 Nucleic Acid Atoms Solvent Atoms 155 Heterogen Atoms 82
Software Software Software Name Purpose REFMAC refinement autoXDS data reduction Aimless data scaling PHASER phasing