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Crystal Structure of UFC1 T106V
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Z6O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 1.5M Ammonium sulfate, 0.1M Tris pH 8.0.
Crystal Properties Matthews coefficient Solvent content 1.97 37.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.59 α = 90 b = 46.59 β = 90 c = 142.54 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL DECTRIS PILATUS 200K 2022-12-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54187
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 35.63 100 0.098 0.999 13.77 6.73 20248 27.33
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.072 99.8 0.73 0.73 1.77 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2 35.63 11313 545 100 0.18 0.1775 0.1886 0.231 0.2319 21.919
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.514 -0.514 1.028
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.173 r_dihedral_angle_4_deg 18.189 r_dihedral_angle_3_deg 14.277 r_dihedral_angle_1_deg 6.541 r_lrange_it 4.783 r_lrange_other 4.733 r_scangle_it 3.645 r_scangle_other 3.644 r_mcangle_it 2.353 r_mcangle_other 2.352
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.173 r_dihedral_angle_4_deg 18.189 r_dihedral_angle_3_deg 14.277 r_dihedral_angle_1_deg 6.541 r_lrange_it 4.783 r_lrange_other 4.733 r_scangle_it 3.645 r_scangle_other 3.644 r_mcangle_it 2.353 r_mcangle_other 2.352 r_scbond_it 2.341 r_scbond_other 2.339 r_mcbond_it 1.665 r_mcbond_other 1.626 r_angle_refined_deg 1.584 r_angle_other_deg 1.344 r_nbd_other 0.219 r_symmetry_nbd_refined 0.215 r_nbd_refined 0.21 r_symmetry_nbd_other 0.189 r_nbtor_refined 0.167 r_symmetry_xyhbond_nbd_refined 0.135 r_xyhbond_nbd_refined 0.132 r_chiral_restr 0.081 r_symmetry_nbtor_other 0.081 r_bond_refined_d 0.009 r_xyhbond_nbd_other 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1319 Nucleic Acid Atoms Solvent Atoms 111 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling