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Crystal Structure of UFC1 T106I
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Z6O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 1.5M Ammonium sulfate, 0.1M Bis-Tris Propane pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.1 41.44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.653 α = 90 b = 48.002 β = 90 c = 82.58 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL DECTRIS EIGER X 9M 2021-07-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.91976 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 29.4 97.43 0.066 0.997 7.8 1.83 36233 19.12
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.398 96.09 1.179 0.467 0.86 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.35 29.399 36233 1148 97.218 0.183 0.1822 0.1889 0.201 0.2063 21.324
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.59 0.336 -0.926
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.505 r_dihedral_angle_4_deg 13.875 r_dihedral_angle_3_deg 12.714 r_dihedral_angle_1_deg 6.686 r_lrange_it 6.002 r_lrange_other 5.834 r_scangle_it 4.654 r_scangle_other 4.652 r_scbond_it 3.132 r_scbond_other 3.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.505 r_dihedral_angle_4_deg 13.875 r_dihedral_angle_3_deg 12.714 r_dihedral_angle_1_deg 6.686 r_lrange_it 6.002 r_lrange_other 5.834 r_scangle_it 4.654 r_scangle_other 4.652 r_scbond_it 3.132 r_scbond_other 3.13 r_mcangle_it 2.616 r_mcangle_other 2.615 r_angle_refined_deg 1.846 r_mcbond_it 1.766 r_mcbond_other 1.763 r_angle_other_deg 1.522 r_symmetry_nbd_refined 0.337 r_nbd_other 0.33 r_nbd_refined 0.243 r_symmetry_nbd_other 0.195 r_nbtor_refined 0.179 r_xyhbond_nbd_refined 0.135 r_symmetry_xyhbond_nbd_refined 0.117 r_chiral_restr 0.102 r_symmetry_nbtor_other 0.084 r_bond_refined_d 0.013 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1357 Nucleic Acid Atoms Solvent Atoms 171 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling Coot model building