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Crystal Structure of UFC1 T106C
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Z6O
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 1M Ammonium Citrate tribasic pH 7.0, 0.1M Bis-Tris Propane pH 7.0.
Crystal Properties Matthews coefficient Solvent content 2.01 38.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.014 α = 90 b = 47.014 β = 90 c = 142.729 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL DECTRIS EIGER2 XE 16M 2023-03-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 1.34767 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.426 44.654 96.5 0.02949 0.999 12.1 21.3 29760 15.12
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.426 1.451 68.6 0.8167 0.333 0.7 5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.426 44.654 29636 1403 96.055 0.176 0.1745 0.1745 0.208 0.2083 16.107
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.333 -0.333 0.667
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.905 r_dihedral_angle_4_deg 14.019 r_dihedral_angle_3_deg 12.689 r_dihedral_angle_1_deg 6.577 r_lrange_it 5.061 r_lrange_other 4.853 r_scangle_it 3.895 r_scangle_other 3.893 r_scbond_it 2.602 r_scbond_other 2.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.905 r_dihedral_angle_4_deg 14.019 r_dihedral_angle_3_deg 12.689 r_dihedral_angle_1_deg 6.577 r_lrange_it 5.061 r_lrange_other 4.853 r_scangle_it 3.895 r_scangle_other 3.893 r_scbond_it 2.602 r_scbond_other 2.6 r_mcangle_other 2.153 r_mcangle_it 2.124 r_angle_refined_deg 1.837 r_angle_other_deg 1.51 r_mcbond_it 1.501 r_mcbond_other 1.385 r_symmetry_nbd_refined 0.301 r_nbd_refined 0.216 r_symmetry_xyhbond_nbd_refined 0.197 r_nbd_other 0.192 r_symmetry_nbd_other 0.186 r_nbtor_refined 0.178 r_xyhbond_nbd_refined 0.126 r_chiral_restr 0.101 r_symmetry_nbtor_other 0.084 r_bond_refined_d 0.012 r_gen_planes_refined 0.012 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1358 Nucleic Acid Atoms Solvent Atoms 169 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement