☰ Navigation Tabs
CC-Hept-IV-hen2 variant peptide with Hendecad repeat substitution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 1.5 M Ammonium sulfate, 0.1 M Sodium acetate 5.0
Crystal Properties Matthews coefficient Solvent content 2.89 57.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.546 α = 90 b = 47.919 β = 90 c = 153.02 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2023-09-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9537 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.49 19.67 99.8 0.045 0.047 0.013 0.9984 25.1 1 47155
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.49 1.52 96.4 0.3 0.319 0.102 0.9949 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.49 19.67 44719 2435 99.74 0.15195 0.15067 0.1509 0.1751 0.1754 RANDOM 24.747
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.88 -1.3 -0.58
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 13.293 r_long_range_B_other 13.253 r_dihedral_angle_3_deg 9.332 r_scangle_other 8.316 r_scbond_it 5.775 r_scbond_other 5.772 r_mcangle_it 4.262 r_mcangle_other 4.242 r_dihedral_angle_1_deg 3.875 r_mcbond_it 3.075
RMS Deviations Key Refinement Restraint Deviation r_long_range_B_refined 13.293 r_long_range_B_other 13.253 r_dihedral_angle_3_deg 9.332 r_scangle_other 8.316 r_scbond_it 5.775 r_scbond_other 5.772 r_mcangle_it 4.262 r_mcangle_other 4.242 r_dihedral_angle_1_deg 3.875 r_mcbond_it 3.075 r_mcbond_other 3.044 r_rigid_bond_restr 2.877 r_angle_refined_deg 1.356 r_angle_other_deg 0.528 r_chiral_restr 0.074 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1718 Nucleic Acid Atoms Solvent Atoms 193 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement Aimless data scaling autoPROC data reduction PHASER phasing