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Human Angiotensin-1 converting enzyme C-domain in complex with a diprolyl inhibitor- SG16
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6F9T
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 289.15 0.1 M MIB pH 4.0, 5% glycerol, and 15% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.36 47.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.781 α = 90 b = 84.915 β = 90 c = 135.065 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2019-10-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 135.06 99.8 0.066 0.988 8.1 25.9 44900
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 0.613 0.753
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2 67.624 44826 2099 99.753 0.199 0.1958 0.1996 0.2554 0.2604 35.895
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.839 -2.157 1.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.4 r_dihedral_angle_6_deg 15.598 r_dihedral_angle_2_deg 10.447 r_lrange_it 7.368 r_dihedral_angle_1_deg 6.876 r_scangle_it 6.192 r_scbond_it 4.355 r_mcangle_it 3.79 r_mcbond_it 2.78 r_angle_refined_deg 2.601
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.4 r_dihedral_angle_6_deg 15.598 r_dihedral_angle_2_deg 10.447 r_lrange_it 7.368 r_dihedral_angle_1_deg 6.876 r_scangle_it 6.192 r_scbond_it 4.355 r_mcangle_it 3.79 r_mcbond_it 2.78 r_angle_refined_deg 2.601 r_nbtor_refined 0.323 r_nbd_refined 0.228 r_symmetry_xyhbond_nbd_refined 0.214 r_symmetry_nbd_refined 0.203 r_chiral_restr 0.168 r_xyhbond_nbd_refined 0.165 r_bond_refined_d 0.014 r_gen_planes_refined 0.013
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4698 Nucleic Acid Atoms Solvent Atoms 245 Heterogen Atoms 146
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling PHASER phasing