☰ Navigation Tabs
CRYSTAL STRUCTURE OF HUMAN CHYMASE IN COMPLEX WITH COMPOUND1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other in-house model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 0.01M ZnCl2, 0.1M TRIS at pH 8 and 20% PEG 6000
Crystal Properties Matthews coefficient Solvent content 2.72 54.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.093 α = 90 b = 74.093 β = 90 c = 49.647 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2008-04-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.541870
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.36 37.04 97.49 0.113 4.5929 13.85 574082
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.36 2.49 0.27
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.375 37.04 10987 528 99.592 0.206 0.2021 0.2017 0.274 0.2742 43.315
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.253 -0.253 0.506
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.857 r_dihedral_angle_4_deg 19.857 r_dihedral_angle_3_deg 15.019 r_dihedral_angle_1_deg 7.493 r_lrange_it 7.466 r_scangle_it 6.316 r_mcangle_it 4.178 r_scbond_it 4.151 r_mcbond_it 3.03 r_angle_refined_deg 1.584
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.857 r_dihedral_angle_4_deg 19.857 r_dihedral_angle_3_deg 15.019 r_dihedral_angle_1_deg 7.493 r_lrange_it 7.466 r_scangle_it 6.316 r_mcangle_it 4.178 r_scbond_it 4.151 r_mcbond_it 3.03 r_angle_refined_deg 1.584 r_nbtor_refined 0.312 r_nbd_refined 0.276 r_symmetry_nbd_refined 0.231 r_xyhbond_nbd_refined 0.18 r_symmetry_xyhbond_nbd_refined 0.128 r_metal_ion_refined 0.119 r_symmetry_metal_ion_refined 0.074 r_chiral_restr 0.072 r_gen_planes_refined 0.014 r_bond_refined_d 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1666 Nucleic Acid Atoms Solvent Atoms 126 Heterogen Atoms 75
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing