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Human PEX5 TPR domain in complex with PEX14 KIPSWQIPV peptide
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D 1H-13C NOESY 0.4 mM [U-100% 13C; U-100% 15N; U-80% 2H] human PEX5 TPR domain, 4 mM PEX14 KIPSWQI, 20 mM sodium phosphate, 50 mM sodium chloride, 1 mM DTT 93% H2O/7% D2O 83 mM 6.5 1 atm 298 Bruker AVANCE III 900 2 2D 1H-1H NOESY 1 mM PEX14 KIPSWQI, 20 mM sodium phosphate, 50 mM sodium chloride 93% H2O/7% D2O 83 mM 6.5 1 atm 298 Bruker AVANCE III 500 3 2D 1H-1H TOCSY 1 mM PEX14 KIPSWQI, 20 mM sodium phosphate, 50 mM sodium chloride 93% H2O/7% D2O 83 mM 6.5 1 atm 298 Bruker AVANCE III 500 4 2D 1H-13C HSQC 1 mM PEX14 KIPSWQI, 20 mM sodium phosphate, 50 mM sodium chloride 93% H2O/7% D2O 83 mM 6.5 1 atm 298 Bruker AVANCE III 500
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE III 900 2 Bruker AVANCE III 500
NMR Refinement Method Details Software molecular dynamics CcpNmr Analysis
NMR Ensemble Information Conformer Selection Criteria structures with the lowest energy Conformers Calculated Total Number 200 Conformers Submitted Total Number 10 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection TopSpin 3.6 Bruker Biospin 2 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 3 peak picking NMRFAM-SPARKY 3 T. D. Goddard and D. G. Kneller, SPARKY 3, University of California, San Francisco 4 peak picking CcpNmr Analysis 2.4.2 CCPN 5 chemical shift assignment NMRFAM-SPARKY T. D. Goddard and D. G. Kneller, SPARKY 3, University of California, San Francisco 7 structure calculation CYANA 3.3 Guntert, Mumenthaler and Wuthrich 8 structure calculation HADDOCK 2.4 Bonvin 9 refinement HADDOCK 2.4 Bonvin