9GAG | pdb_00009gag

Human PEX5 TPR domain in complex with PEX14 KIPSWQIPV peptide

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	3D 1H-13C NOESY	0.4 mM [U-100% 13C; U-100% 15N; U-80% 2H] human PEX5 TPR domain, 4 mM PEX14 KIPSWQI, 20 mM sodium phosphate, 50 mM sodium chloride, 1 mM DTT	93% H2O/7% D2O	83 mM	6.5	1 atm	298	Bruker AVANCE III 900
2	2D 1H-1H NOESY	1 mM PEX14 KIPSWQI, 20 mM sodium phosphate, 50 mM sodium chloride	93% H2O/7% D2O	83 mM	6.5	1 atm	298	Bruker AVANCE III 500
3	2D 1H-1H TOCSY	1 mM PEX14 KIPSWQI, 20 mM sodium phosphate, 50 mM sodium chloride	93% H2O/7% D2O	83 mM	6.5	1 atm	298	Bruker AVANCE III 500
4	2D 1H-13C HSQC	1 mM PEX14 KIPSWQI, 20 mM sodium phosphate, 50 mM sodium chloride	93% H2O/7% D2O	83 mM	6.5	1 atm	298	Bruker AVANCE III 500

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III	900
2	Bruker	AVANCE III	500

NMR Refinement
Method	Details	Software
molecular dynamics		CcpNmr Analysis

NMR Ensemble Information
Conformer Selection Criteria	structures with the lowest energy
Conformers Calculated Total Number	200
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	collection	TopSpin	3.6	Bruker Biospin
2	processing	NMRPipe		Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax
3	peak picking	NMRFAM-SPARKY	3	T. D. Goddard and D. G. Kneller, SPARKY 3, University of California, San Francisco
4	peak picking	CcpNmr Analysis	2.4.2	CCPN
5	chemical shift assignment	NMRFAM-SPARKY		T. D. Goddard and D. G. Kneller, SPARKY 3, University of California, San Francisco
7	structure calculation	CYANA	3.3	Guntert, Mumenthaler and Wuthrich
8	structure calculation	HADDOCK	2.4	Bonvin
9	refinement	HADDOCK	2.4	Bonvin