☰ Navigation Tabs
Crystal structure of the human METTL3-METTL14 in complex with small molecule inhibitor Compound 59
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7O2I
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 0.2 M calcium chloride, 0.1 M Tris:HCl pH 8.0, 18% (w/v) PEG 4000, 20C, sitting
drop, protein:precipitant solution ratio = 1:1
Crystal Properties Matthews coefficient Solvent content 2.5 50.77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.295 α = 90 b = 64.295 β = 90 c = 226.79 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-09-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.978565 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 44.87 99.9 0.999 14.1 16.6 45188
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.89 0.97
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.85 44.87 45188 2290 99.7 0.18607 0.184 0.196 0.22633 0.2061 RANDOM 40.778
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.01 -0.02 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.532 r_dihedral_angle_4_deg 21.149 r_dihedral_angle_3_deg 14.075 r_long_range_B_other 8.743 r_long_range_B_refined 8.733 r_dihedral_angle_1_deg 7.582 r_scangle_other 5.962 r_mcangle_it 5.606 r_mcangle_other 5.605 r_scbond_it 3.887
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.532 r_dihedral_angle_4_deg 21.149 r_dihedral_angle_3_deg 14.075 r_long_range_B_other 8.743 r_long_range_B_refined 8.733 r_dihedral_angle_1_deg 7.582 r_scangle_other 5.962 r_mcangle_it 5.606 r_mcangle_other 5.605 r_scbond_it 3.887 r_scbond_other 3.879 r_mcbond_it 3.732 r_mcbond_other 3.732 r_angle_refined_deg 1.597 r_angle_other_deg 1.291 r_chiral_restr 0.076 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3809 Nucleic Acid Atoms Solvent Atoms 326 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing