☰ Navigation Tabs
VHH H3-2 in complex with Tau C-terminal peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7QCQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 23% PEG-MME 2000, 0.1 M potassium acetate
Crystal Properties Matthews coefficient Solvent content 2.02 39.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.394 α = 90 b = 76.346 β = 90 c = 95.565 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2023-03-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.978564977646 SOLEIL PROXIMA 1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 45.549 100 0.087 0.096 0.04 0.999 19.1 10.7 48459
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 2.586 2.846 1.178 0.721 10.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.8 45.549 48398 2348 99.944 0.174 0.1717 0.2312 0.2403 35.115
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.396 -0.395 -0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.828 r_dihedral_angle_6_deg 14 r_lrange_other 12.305 r_lrange_it 12.283 r_dihedral_angle_2_deg 9.826 r_scangle_it 9.343 r_scangle_other 9.341 r_mcangle_it 8.567 r_mcangle_other 8.566 r_dihedral_angle_1_deg 7.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.828 r_dihedral_angle_6_deg 14 r_lrange_other 12.305 r_lrange_it 12.283 r_dihedral_angle_2_deg 9.826 r_scangle_it 9.343 r_scangle_other 9.341 r_mcangle_it 8.567 r_mcangle_other 8.566 r_dihedral_angle_1_deg 7.5 r_scbond_it 6.594 r_scbond_other 6.587 r_mcbond_it 5.932 r_mcbond_other 5.91 r_angle_refined_deg 2.376 r_angle_other_deg 0.824 r_symmetry_xyhbond_nbd_refined 0.257 r_xyhbond_nbd_refined 0.24 r_symmetry_nbd_refined 0.236 r_nbd_refined 0.225 r_symmetry_nbd_other 0.218 r_nbd_other 0.201 r_nbtor_refined 0.192 r_symmetry_xyhbond_nbd_other 0.192 r_chiral_restr 0.123 r_symmetry_nbtor_other 0.098 r_bond_refined_d 0.015 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4232 Nucleic Acid Atoms Solvent Atoms 470 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement Coot model building Aimless data scaling XDS data reduction pointless data scaling MOLREP phasing