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Coxsackievirus A16 3C protease in C2 2 21 spacegroup
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3SJ8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 Shotgun1 well A01
0.2M Magnesium chloride hexahydrate, 0.1M Tris pH 8.5,
30% w/v PEG 4000,
Crystal Properties Matthews coefficient Solvent content 1.98 37.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.36 α = 90 b = 65.17 β = 90 c = 76.09 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 9M 2023-12-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9212 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.37 39.24 73.91 0.999 20.2 10.5 25094
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.37 1.39 0.264
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.37 39.236 25068 1339 73.829 0.154 0.1511 0.2065 0.2167 23.874
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.273 1.028 -0.756
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 16.689 r_dihedral_angle_6_deg 15.631 r_lrange_other 15.125 r_dihedral_angle_3_deg 11.48 r_scangle_it 11.227 r_scangle_other 11.222 r_dihedral_angle_2_deg 8.95 r_mcangle_other 8.874 r_mcangle_it 8.872 r_scbond_it 7.883
RMS Deviations Key Refinement Restraint Deviation r_lrange_it 16.689 r_dihedral_angle_6_deg 15.631 r_lrange_other 15.125 r_dihedral_angle_3_deg 11.48 r_scangle_it 11.227 r_scangle_other 11.222 r_dihedral_angle_2_deg 8.95 r_mcangle_other 8.874 r_mcangle_it 8.872 r_scbond_it 7.883 r_scbond_other 7.878 r_dihedral_angle_1_deg 6.711 r_mcbond_it 6.218 r_mcbond_other 6.173 r_rigid_bond_restr 3.891 r_angle_refined_deg 1.815 r_angle_other_deg 0.77 r_symmetry_xyhbond_nbd_refined 0.372 r_nbd_refined 0.194 r_symmetry_nbd_refined 0.194 r_xyhbond_nbd_refined 0.174 r_symmetry_nbd_other 0.163 r_nbd_other 0.161 r_nbtor_refined 0.157 r_chiral_restr 0.099 r_symmetry_nbtor_other 0.077 r_bond_refined_d 0.009 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1391 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling REFMAC phasing