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Studies on chimeric PeAFB
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7ZTF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 294 1.6M Ammonium Sulfate, 1M Lithium Sulfate
Crystal Properties Matthews coefficient Solvent content 1.94 36.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.158 α = 90 b = 46.158 β = 90 c = 41.936 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2023-07-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.97926 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 41.94 94.5 0.046 0.048 0.015 1 30.3 18.5 12340
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.32 0.651 0.702 0.256 0.949 14
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.3 39.973 12319 638 94.326 0.14 0.1381 0.1381 0.1669 0.167 21.807
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.492 -0.246 -0.492 1.596
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 19.702 r_lrange_it 19.184 r_lrange_other 18.931 r_dihedral_angle_3_deg 15.068 r_scangle_it 13.213 r_scangle_other 13.196 r_mcangle_other 9.398 r_mcangle_it 9.391 r_scbond_it 9.128 r_scbond_other 9.115
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 19.702 r_lrange_it 19.184 r_lrange_other 18.931 r_dihedral_angle_3_deg 15.068 r_scangle_it 13.213 r_scangle_other 13.196 r_mcangle_other 9.398 r_mcangle_it 9.391 r_scbond_it 9.128 r_scbond_other 9.115 r_dihedral_angle_1_deg 6.659 r_mcbond_it 6.459 r_mcbond_other 6.365 r_rigid_bond_restr 5.314 r_angle_refined_deg 2.351 r_dihedral_angle_2_deg 2.115 r_angle_other_deg 1.307 r_xyhbond_nbd_refined 0.46 r_nbd_refined 0.26 r_symmetry_nbd_other 0.165 r_symmetry_xyhbond_nbd_refined 0.162 r_nbtor_refined 0.157 r_symmetry_nbd_refined 0.136 r_chiral_restr 0.128 r_nbd_other 0.121 r_symmetry_nbtor_other 0.073 r_bond_refined_d 0.014 r_gen_planes_refined 0.013 r_bond_other_d 0.006 r_gen_planes_other 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 452 Nucleic Acid Atoms Solvent Atoms 58 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement REFMAC refinement Aimless data scaling AutoProcess data reduction AutoProcess data scaling MOLREP phasing