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Architectural insights into the corrin and metal binding sites of CobN cobaltochelatase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 291 0.2 M Lithium sulfate, 30% polyethylene glycol 4000 and 0.1M Tris pH 8.5
Crystal Properties Matthews coefficient Solvent content 2.43 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.13 α = 90 b = 74.19 β = 90 c = 85.89 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.979 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.93 25.93 98.2 0.046 16.4 3.8 111314
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.93 1.98 86 0.339 2.3 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD FREE R-VALUE 1.965 7.143 27509 1391 96.465 0.176 0.173 0.2288 0.2173 27.408
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.013 0.002 -0.015
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.844 r_dihedral_angle_3_deg 12.958 r_dihedral_angle_2_deg 12.757 r_lrange_it 6.946 r_lrange_other 6.925 r_dihedral_angle_1_deg 6.645 r_scangle_it 6.096 r_scangle_other 6.094 r_scbond_it 4.21 r_scbond_other 4.209
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 15.844 r_dihedral_angle_3_deg 12.958 r_dihedral_angle_2_deg 12.757 r_lrange_it 6.946 r_lrange_other 6.925 r_dihedral_angle_1_deg 6.645 r_scangle_it 6.096 r_scangle_other 6.094 r_scbond_it 4.21 r_scbond_other 4.209 r_mcangle_it 3.633 r_mcangle_other 3.632 r_mcbond_it 2.766 r_mcbond_other 2.763 r_angle_refined_deg 2.196 r_angle_other_deg 1.11 r_nbd_refined 0.19 r_nbtor_refined 0.157 r_symmetry_nbd_other 0.138 r_nbd_other 0.132 r_chiral_restr 0.127 r_xyhbond_nbd_refined 0.127 r_symmetry_nbd_refined 0.109 r_symmetry_xyhbond_nbd_refined 0.088 r_symmetry_nbtor_other 0.064 r_bond_refined_d 0.013 r_gen_planes_refined 0.012 r_bond_other_d 0.006 r_gen_planes_other 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2967 Nucleic Acid Atoms Solvent Atoms 201 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling BUCCANEER phasing