9FO9 | pdb_00009fo9

5_SL5a of S_SL5 of Sars-Cov-2

SOLUTION NMR

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NMR Experiment
Experiment	Type	Sample Contents	Solvent	Ionic Strength	pH	Pressure	Temperature (K)	Spectrometer
1	2D 1H-1H NOESY	280 mM [U-10% 13C; U-100% 15N] RNA (33-MER), 50 mM potassium chloride, 25 mM potassium phosphate	95% H2O/5% D2O	25 mM	6.2	1 Pa	308	Bruker AVANCE NEO 600
2	2D 1H-1H NOESY	280 mM [U-10% 13C; U-100% 15N] RNA (33-MER), 50 mM potassium chloride, 25 mM potassium phosphate	95% H2O/5% D2O	25 mM	6.2	1 Pa	308	Bruker AVANCE NEO 600
3	2D 1H-1H NOESY	280 mM [U-10% 13C; U-100% 15N] RNA (33-MER), 50 mM potassium chloride, 25 mM potassium phosphate	95% H2O/5% D2O	25 mM	6.2	1 Pa	308	Bruker AVANCE NEO 600
4	2D 1H-1H NOESY	400 mM [U-10% 13C; U-100% 15N] RNA (33-MER), 50 mM potassium chloride, 25 mM potassium phosphate	100% D2O	25 mM	6.2	1 Pa	308	Bruker AVANCE III 800
5	2D 1H-1H NOESY	400 mM [U-10% 13C; U-100% 15N] RNA (33-MER), 50 mM potassium chloride, 25 mM potassium phosphate	100% D2O	25 mM	6.2	1 Pa	308	Bruker AVANCE III 800
6	2D 1H-13C HSQC	280 mM [U-10% 13C; U-100% 15N] RNA (33-MER), 50 mM potassium chloride, 25 mM potassium phosphate	95% H2O/5% D2O	25 mM	6.2	1 Pa	308	Bruker AVANCE NEO 600
9	2D 1H-13C HSQC aromatic	280 mM [U-10% 13C; U-100% 15N] RNA (33-MER), 50 mM potassium chloride, 25 mM potassium phosphate	95% H2O/5% D2O	25 mM	6.2	1 Pa	308	Bruker AVANCE NEO 600
8	2D 1H-13C HSQC	400 mM [U-10% 13C; U-100% 15N] RNA (33-MER), 50 mM potassium chloride, 25 mM potassium phosphate	100% D2O	25 mM	6.2	1 Pa	308	Bruker AVANCE III 800
7	2D 1H-13C HSQC aromatic	400 mM [U-10% 13C; U-100% 15N] RNA (33-MER), 50 mM potassium chloride, 25 mM potassium phosphate	100% D2O	25 mM	6.2	1 Pa	308	Bruker AVANCE III 800
16	2D 1H-13C HSQC	200 mM [U-10% 13C; U-100% 15N] RNA (33-MER), 50 mM potassium chloride, 25 mM potassium phosphate	95% H2O/5% D2O	25 mM	6.2	1 Pa	308	Bruker AVANCE III HD 800
17	2D 1H-13C HSQC aromatic	200 mM [U-10% 13C; U-100% 15N] RNA (33-MER), 50 mM potassium chloride, 25 mM potassium phosphate	95% H2O/5% D2O	25 mM	6.2	1 Pa	308	Bruker AVANCE III HD 800
18	2D 1H-13C HSQC	200 mM [U-10% 13C; U-100% 15N] RNA (33-MER), 50 mM potassium chloride, 25 mM potassium phosphate, 21 mg/mL Pf1 phage	95% H2O/5% D2O	25 mM	6.2	1 Pa	308	Bruker AVANCE III HD 800
19	2D 1H-13C HSQC aromatic	200 mM [U-10% 13C; U-100% 15N] RNA (33-MER), 50 mM potassium chloride, 25 mM potassium phosphate, 21 mg/mL Pf1 phage	95% H2O/5% D2O	25 mM	6.2	1 Pa	308	Bruker AVANCE III HD 800

NMR Spectrometer Information
Spectrometer	Manufacturer	Model	Field Strength
1	Bruker	AVANCE III HD	800
4	Bruker	AVANCE NEO	600
5	Bruker	AVANCE III	800

NMR Refinement
Method	Details	Software
simulated annealing		CNS
na	water refinement	ARIA

NMR Ensemble Information
Conformer Selection Criteria	structures with the least restraint violations
Conformers Calculated Total Number	200
Conformers Submitted Total Number	10
Representative Model	1 (lowest energy)

Computation: NMR Software
#	Classification	Version	Software Name	Author
1	chemical shift assignment	NMRFAM-SPARKY	3.190	Lee W, Tonelli M, Markley JL
2	structure calculation	CNS		Brunger, Adams, Clore, Gros, Nilges and Read
3	structure calculation	ARIA		Linge, O'Donoghue and Nilges
4	processing	TopSpin	3.6.3	Bruker Biospin
5	processing	TopSpin	4.1.4	Bruker Biospin