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Crystal structure of human carboanhydrase XII with 5,7,8-trifluoro-4-(3-propylhexyl)-3,4-dihydro-2H-benzo[b][1,4]thiazine-6-sulfonamide 1,1-dioxide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6R6Y
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 Ammonium Citrate pH 7.0 0.1M; Ammonium Sulfate 0.2M; PEG4000 26% (w/v)
Crystal Properties Matthews coefficient Solvent content 2.11 41.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.458 α = 90 b = 74.097 β = 108.94 c = 91.6 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2022-12-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) 0.90500 PETRA III, EMBL c/o DESY P13 (MX1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.12 86.64 97 0.07 0.082 0.043 0.998 10.3 6.6 361487 10.735
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.12 1.14 50.7 0.951 1.234 0.773 0.449 0.8 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.12 86.64 325192 36215 96.98 0.15502 0.15202 0.1552 0.18228 0.1816 RANDOM 18.557
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.09 -0.07 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.47 r_dihedral_angle_4_deg 14.7 r_dihedral_angle_3_deg 11.897 r_dihedral_angle_1_deg 7.138 r_rigid_bond_restr 5.532 r_long_range_B_refined 4.104 r_scbond_it 4.061 r_mcangle_it 2.633 r_mcbond_it 2.337 r_angle_refined_deg 1.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.47 r_dihedral_angle_4_deg 14.7 r_dihedral_angle_3_deg 11.897 r_dihedral_angle_1_deg 7.138 r_rigid_bond_restr 5.532 r_long_range_B_refined 4.104 r_scbond_it 4.061 r_mcangle_it 2.633 r_mcbond_it 2.337 r_angle_refined_deg 1.85 r_chiral_restr 0.125 r_gen_planes_refined 0.015 r_bond_refined_d 0.012 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8288 Nucleic Acid Atoms Solvent Atoms 1142 Heterogen Atoms 132
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing