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Crystal structure of haspin (GSG2) in complex with MU1668
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 7OPS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 63% MPD, 0.1M SPG 7.0
Crystal Properties Matthews coefficient Solvent content 3.03 59.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.822 α = 90 b = 77.908 β = 90 c = 81.313 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2020-06-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.18 45.59 100 0.114 0.124 0.062 0.998 11.1 7.5 26473
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.18 2.26 0.973 1.051 0.396 0.724 2 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.18 45.59 25128 1294 99.95 0.1663 0.16485 0.1752 0.19705 0.2069 RANDOM 39.187
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 -1.42 1.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.895 r_dihedral_angle_3_deg 14.775 r_dihedral_angle_4_deg 12.816 r_dihedral_angle_1_deg 8.112 r_long_range_B_refined 6.714 r_long_range_B_other 6.713 r_scangle_other 5.274 r_scbond_it 3.366 r_scbond_other 3.365 r_mcangle_it 3.124
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.895 r_dihedral_angle_3_deg 14.775 r_dihedral_angle_4_deg 12.816 r_dihedral_angle_1_deg 8.112 r_long_range_B_refined 6.714 r_long_range_B_other 6.713 r_scangle_other 5.274 r_scbond_it 3.366 r_scbond_other 3.365 r_mcangle_it 3.124 r_mcangle_other 3.123 r_mcbond_it 2.143 r_mcbond_other 2.142 r_angle_refined_deg 1.382 r_angle_other_deg 1.328 r_chiral_restr 0.072 r_gen_planes_refined 0.013 r_bond_refined_d 0.012 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2627 Nucleic Acid Atoms Solvent Atoms 173 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement Aimless data scaling XDS data reduction PHASER phasing