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compound 2c bound KMT9 crystal structure
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6H1D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 52% Tacsimate, PH 7.7
Crystal Properties Matthews coefficient Solvent content 3.18 61.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 110.346 α = 90 b = 110.346 β = 90 c = 130.69 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2019-02-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 1.0 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.47 47.78 99.9 0.065 1 34.6 39.4 80265
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.47 1.49 0.563
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.47 47.78 80199 4000 99.873 0.16 0.1584 0.1636 0.1904 0.1927 RANDOM 26.316
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.537 -0.269 -0.537 1.742
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.448 r_dihedral_angle_3_deg 14.838 r_rigid_bond_restr 11.101 r_scbond_it 9.169 r_scbond_other 9.166 r_scangle_it 9.028 r_scangle_other 9.026 r_lrange_other 8.233 r_lrange_it 8.207 r_dihedral_angle_1_deg 6.742
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 17.448 r_dihedral_angle_3_deg 14.838 r_rigid_bond_restr 11.101 r_scbond_it 9.169 r_scbond_other 9.166 r_scangle_it 9.028 r_scangle_other 9.026 r_lrange_other 8.233 r_lrange_it 8.207 r_dihedral_angle_1_deg 6.742 r_dihedral_angle_2_deg 6.324 r_mcangle_it 5.836 r_mcangle_other 5.834 r_mcbond_it 5.503 r_mcbond_other 5.501 r_angle_refined_deg 1.732 r_angle_other_deg 0.6 r_nbd_refined 0.255 r_symmetry_xyhbond_nbd_refined 0.244 r_nbd_other 0.227 r_symmetry_nbd_other 0.193 r_symmetry_nbd_refined 0.186 r_nbtor_refined 0.169 r_xyhbond_nbd_refined 0.149 r_chiral_restr 0.093 r_symmetry_nbtor_other 0.081 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2413 Nucleic Acid Atoms Solvent Atoms 137 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction Aimless data scaling PHASER phasing