☰ Navigation Tabs
Human Monoamine Oxidase B in complex with MC4762 inhibitor (9a) at 1.4 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2V5Z
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 277.15 12 % (w/v) PEG 4000, 100 mM ADA buffer pH 6.5, 70 mM Lithium Sulfate, 4.5 mM Zwittergent 3-12
Crystal Properties Matthews coefficient Solvent content 2.65 53.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.92 α = 90 b = 222.033 β = 90 c = 85.879 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 2M 2022-02-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-1 0.965459 ESRF MASSIF-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 47.18 99.8 0.087 0.998 12.9 6.4 243584
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.42 100 1.081 0.627 1.7 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.4 47.18 243471 6176 99.706 0.167 0.1667 0.1762 0.1899 0.1977 15.064
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.585 -0.428 -0.157
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.336 r_dihedral_angle_other_3_deg 19.871 r_dihedral_angle_4_deg 14.488 r_dihedral_angle_3_deg 12.679 r_dihedral_angle_1_deg 6.497 r_lrange_it 5.387 r_lrange_other 5.225 r_scangle_it 4.208 r_scangle_other 4.208 r_scbond_it 2.797
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.336 r_dihedral_angle_other_3_deg 19.871 r_dihedral_angle_4_deg 14.488 r_dihedral_angle_3_deg 12.679 r_dihedral_angle_1_deg 6.497 r_lrange_it 5.387 r_lrange_other 5.225 r_scangle_it 4.208 r_scangle_other 4.208 r_scbond_it 2.797 r_scbond_other 2.797 r_mcangle_it 1.942 r_mcangle_other 1.942 r_angle_other_deg 1.933 r_angle_refined_deg 1.93 r_mcbond_it 1.358 r_mcbond_other 1.356 r_nbd_other 0.338 r_nbd_refined 0.231 r_symmetry_nbd_other 0.2 r_symmetry_xyhbond_nbd_refined 0.187 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.144 r_chiral_restr 0.106 r_symmetry_nbd_refined 0.096 r_symmetry_nbtor_other 0.091 r_symmetry_xyhbond_nbd_other 0.07 r_chiral_restr_other 0.068 r_xyhbond_nbd_other 0.036 r_bond_refined_d 0.016 r_gen_planes_refined 0.013 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7911 Nucleic Acid Atoms Solvent Atoms 973 Heterogen Atoms 187
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling REFMAC phasing