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cilia and flagella associated protein 299
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold Q6V702
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 293 20% PEG6000 -- 10% ethylene glycol -- 0.1M MES pH 6.0 -- 0.01M zinc chloride
Crystal Properties Matthews coefficient Solvent content 1.96 37.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.756 α = 91.354 b = 34.449 β = 100.003 c = 58.984 γ = 90.09
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER2 XE 16M 2022-08-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.49 58.071 71.6 0.998 1.29 3.5 28810 8.45
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.49 1.52 0.925
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.49 58.071 28809 1450 71.625 0.177 0.1745 0.1746 0.2189 0.2188 13.565
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.357 0.219 -0.03 -0.22 0.395 0.534
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.583 r_dihedral_angle_3_deg 13.235 r_dihedral_angle_1_deg 7.4 r_dihedral_angle_2_deg 6.775 r_lrange_it 5.058 r_scangle_it 3.179 r_mcangle_it 2.186 r_scbond_it 2.113 r_angle_refined_deg 1.962 r_mcbond_it 1.361
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 16.583 r_dihedral_angle_3_deg 13.235 r_dihedral_angle_1_deg 7.4 r_dihedral_angle_2_deg 6.775 r_lrange_it 5.058 r_scangle_it 3.179 r_mcangle_it 2.186 r_scbond_it 2.113 r_angle_refined_deg 1.962 r_mcbond_it 1.361 r_nbtor_refined 0.317 r_nbd_refined 0.212 r_symmetry_nbd_refined 0.183 r_symmetry_xyhbond_nbd_refined 0.182 r_xyhbond_nbd_refined 0.156 r_chiral_restr 0.131 r_symmetry_metal_ion_refined 0.091 r_ncsr_local_group_1 0.074 r_metal_ion_refined 0.061 r_bond_refined_d 0.01 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2279 Nucleic Acid Atoms Solvent Atoms 264 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement xia2 data reduction DIALS data scaling PHASER phasing