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LSSmOrange (P1) - Directionality of Optical Properties of Fluorescent Proteins
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4RYS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 40 % v/v Polyethylene glycol 300
100 mM MES
200 mM Calcium acetate
Crystal Properties Matthews coefficient Solvent content 1.92 35.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.95 α = 90 b = 62.08 β = 90 c = 68.82 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2022-01-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 50 99.7 0.146 0.161 0.998 8.41 3.8 36428
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.96 2.8489999999999998 3.156 0.337
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.6 46.1 27763 1458 99.09 0.17931 0.17745 0.21447 0.2291 RANDOM 19.891
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.67 -0.61 2.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.525 r_dihedral_angle_3_deg 12.664 r_dihedral_angle_1_deg 7.514 r_dihedral_angle_4_deg 7.468 r_long_range_B_refined 6.706 r_long_range_B_other 6.53 r_scangle_other 4.475 r_scbond_it 2.934 r_scbond_other 2.916 r_mcangle_it 2.521
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.525 r_dihedral_angle_3_deg 12.664 r_dihedral_angle_1_deg 7.514 r_dihedral_angle_4_deg 7.468 r_long_range_B_refined 6.706 r_long_range_B_other 6.53 r_scangle_other 4.475 r_scbond_it 2.934 r_scbond_other 2.916 r_mcangle_it 2.521 r_mcangle_other 2.52 r_angle_refined_deg 1.963 r_mcbond_it 1.725 r_mcbond_other 1.724 r_angle_other_deg 1.452 r_chiral_restr 0.089 r_bond_refined_d 0.013 r_gen_planes_refined 0.011 r_bond_other_d 0.007 r_gen_planes_other 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1787 Nucleic Acid Atoms Solvent Atoms 188 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement XDS data scaling XDS data reduction MOLREP phasing