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N-TERMINAL BROMODOMAIN OF HUMAN BRD4 with (5-(4-chloro-1-((tetrahydro-2H-pyran-4-yl)methyl)-1H-imidazol-2-yl)-1,3-dimethylpyridin-2(1H)-one
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other in house
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.1M MMT(Malic acid, MES, Tris) pH9.0,25% w/v PEG1500
Crystal Properties Matthews coefficient Solvent content 1.87 34.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.589 α = 90 b = 49.042 β = 90 c = 58.138 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN A200 2016-07-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.54178
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 36.59 98.5 0.062 0.969 10.9 2.6 9882
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 2.03 97.8 0.287 0.649 2.8 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.853 32.744 9726 518 96.526 0.186 0.184 0.1925 0.2193 0.2262 21.682
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.653 0.722 -1.375
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.896 r_dihedral_angle_3_deg 14.109 r_lrange_it 7.564 r_lrange_other 7.493 r_dihedral_angle_2_deg 6.777 r_dihedral_angle_1_deg 5.29 r_scangle_it 4.993 r_scangle_other 4.991 r_mcangle_it 3.505 r_mcangle_other 3.502
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.896 r_dihedral_angle_3_deg 14.109 r_lrange_it 7.564 r_lrange_other 7.493 r_dihedral_angle_2_deg 6.777 r_dihedral_angle_1_deg 5.29 r_scangle_it 4.993 r_scangle_other 4.991 r_mcangle_it 3.505 r_mcangle_other 3.502 r_scbond_it 3.11 r_scbond_other 3.107 r_mcbond_it 2.1 r_mcbond_other 2.095 r_angle_refined_deg 1.241 r_angle_other_deg 0.444 r_nbd_other 0.256 r_symmetry_xyhbond_nbd_refined 0.25 r_symmetry_nbd_refined 0.226 r_nbd_refined 0.211 r_symmetry_nbd_other 0.185 r_nbtor_refined 0.185 r_xyhbond_nbd_refined 0.132 r_symmetry_nbtor_other 0.077 r_chiral_restr 0.063 r_xyhbond_nbd_other 0.063 r_gen_planes_refined 0.005 r_bond_refined_d 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1061 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms 26
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling