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Gcase in complex with small molecule inhibitor 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 F4
.1M KSCN
25% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.14 42.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.689 α = 90 b = 74.025 β = 102.64 c = 68.701 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-11-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 .97625 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.485 51.47 84.1 0.167 6.8 2.9 73987
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.485 1.537 56.9 1.758
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.49 51.47 73987 3736 91.58 0.19929 0.19763 0.2069 0.23248 0.2399 RANDOM 18.557
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 0.72 -0.18 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.671 r_dihedral_angle_4_deg 14.659 r_dihedral_angle_3_deg 13.991 r_dihedral_angle_1_deg 9.363 r_long_range_B_refined 4.848 r_long_range_B_other 4.805 r_scbond_it 2.034 r_scbond_other 2.034 r_angle_refined_deg 1.49 r_mcbond_it 0.852
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.671 r_dihedral_angle_4_deg 14.659 r_dihedral_angle_3_deg 13.991 r_dihedral_angle_1_deg 9.363 r_long_range_B_refined 4.848 r_long_range_B_other 4.805 r_scbond_it 2.034 r_scbond_other 2.034 r_angle_refined_deg 1.49 r_mcbond_it 0.852 r_mcbond_other 0.852 r_angle_other_deg 0.513 r_chiral_restr 0.076 r_bond_refined_d 0.01 r_bond_other_d 0.001 r_gen_planes_refined 0.001 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3970 Nucleic Acid Atoms Solvent Atoms 457 Heterogen Atoms 125
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling REFMAC phasing